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Results: 1 to 20 of 29

1.

Precise montaging and metric quantification of retinal surface area from ultra-widefield fundus photography and fluorescein angiography.

Croft DE, van Hemert J, Wykoff CC, Clifton D, Verhoek M, Fleming A, Brown DM.

Ophthalmic Surg Lasers Imaging Retina. 2014 Jul 1;45(4):312-7. doi: 10.3928/23258160-20140709-07.

PMID:
25037013
[PubMed - in process]
2.

Histatin 5 binds to Porphyromonas gingivalis hemagglutinin B (HagB) and alters HagB-induced chemokine responses.

Borgwardt DS, Martin AD, Van Hemert JR, Yang J, Fischer CL, Recker EN, Nair PR, Vidva R, Chandrashekaraiah S, Progulske-Fox A, Drake D, Cavanaugh JE, Vali S, Zhang Y, Brogden KA.

Sci Rep. 2014 Jan 29;4:3904. doi: 10.1038/srep03904.

PMID:
24473528
[PubMed - in process]
Free PMC Article
3.

Automatic extraction of retinal features from colour retinal images for glaucoma diagnosis: a review.

Haleem MS, Han L, van Hemert J, Li B.

Comput Med Imaging Graph. 2013 Oct-Dec;37(7-8):581-96. doi: 10.1016/j.compmedimag.2013.09.005. Epub 2013 Sep 27. Review.

PMID:
24139134
[PubMed - indexed for MEDLINE]
4.

Towards automatic detection of abnormal retinal capillaries in ultra-widefield-of-view retinal angiographic exams.

Zutis K, Trucco E, Hubschman JP, Reed D, Shah S, van Hemert J.

Conf Proc IEEE Eng Med Biol Soc. 2013;2013:7372-5. doi: 10.1109/EMBC.2013.6611261.

PMID:
24111448
[PubMed - in process]
5.

Human β-defensin-3 alters, but does not inhibit, the binding of Porphyromonas gingivalis haemagglutinin B to the surface of human dendritic cells.

Van Hemert JR, Recker EN, Dietrich D, Progulske-Fox A, Kurago ZB, Walters KS, Cavanaugh JE, Brogden KA.

Int J Antimicrob Agents. 2012 Jul;40(1):75-9. doi: 10.1016/j.ijantimicag.2012.03.007. Epub 2012 May 9.

PMID:
22578747
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Comparative analysis of grapevine whole-genome gene predictions, functional annotation, categorization and integration of the predicted gene sequences.

Grimplet J, Van Hemert J, Carbonell-Bejerano P, Díaz-Riquelme J, Dickerson J, Fennell A, Pezzotti M, Martínez-Zapater JM.

BMC Res Notes. 2012 May 3;5:213. doi: 10.1186/1756-0500-5-213.

PMID:
22554261
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

EnzML: multi-label prediction of enzyme classes using InterPro signatures.

De Ferrari L, Aitken S, van Hemert J, Goryanin I.

BMC Bioinformatics. 2012 Apr 25;13:61. doi: 10.1186/1471-2105-13-61.

PMID:
22533924
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Discriminating response groups in metabolic and regulatory pathway networks.

Van Hemert JL, Dickerson JA.

Bioinformatics. 2012 Apr 1;28(7):947-54. doi: 10.1093/bioinformatics/bts039. Epub 2012 Feb 4.

PMID:
22308149
[PubMed - indexed for MEDLINE]
Free Article
9.

PLEXdb: gene expression resources for plants and plant pathogens.

Dash S, Van Hemert J, Hong L, Wise RP, Dickerson JA.

Nucleic Acids Res. 2012 Jan;40(Database issue):D1194-201. doi: 10.1093/nar/gkr938. Epub 2011 Nov 13.

PMID:
22084198
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Validation and mismatch repair of workflows through typed data streams.

Yaikhom G, Atkinson MP, van Hemert JI, Corcho O, Krause A.

Philos Trans A Math Phys Eng Sci. 2011 Aug 28;369(1949):3285-99. doi: 10.1098/rsta.2011.0135.

PMID:
21768140
[PubMed]
11.

Performance database: capturing data for optimizing distributed streaming workflows.

Liew CS, Atkinson MP, Ostrowski R, Cole M, van Hemert JI, Han L.

Philos Trans A Math Phys Eng Sci. 2011 Aug 28;369(1949):3268-84. doi: 10.1098/rsta.2011.0134.

PMID:
21768139
[PubMed]
12.

A user-friendly web portal for T-Coffee on supercomputers.

Rius J, Cores F, Solsona F, van Hemert JI, Koetsier J, Notredame C.

BMC Bioinformatics. 2011 May 12;12:150. doi: 10.1186/1471-2105-12-150.

PMID:
21569428
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

CytoModeler: a tool for bridging large-scale network analysis and dynamic quantitative modeling.

Xia T, Van Hemert J, Dickerson JA.

Bioinformatics. 2011 Jun 1;27(11):1578-80. doi: 10.1093/bioinformatics/btr150. Epub 2011 Apr 20.

PMID:
21511714
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Automatically identifying and annotating mouse embryo gene expression patterns.

Han L, van Hemert JI, Baldock RA.

Bioinformatics. 2011 Apr 15;27(8):1101-7. doi: 10.1093/bioinformatics/btr105. Epub 2011 Feb 25.

PMID:
21357576
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

A garter snake transcriptome: pyrosequencing, de novo assembly, and sex-specific differences.

Schwartz TS, Tae H, Yang Y, Mockaitis K, Van Hemert JL, Proulx SR, Choi JH, Bronikowski AM.

BMC Genomics. 2010 Dec 7;11:694. doi: 10.1186/1471-2164-11-694.

PMID:
21138572
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

PathwayAccess: CellDesigner plugins for pathway databases.

Van Hemert JL, Dickerson JA.

Bioinformatics. 2010 Sep 15;26(18):2345-6. doi: 10.1093/bioinformatics/btq423. Epub 2010 Jul 20.

PMID:
20647521
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Monte Carlo randomization tests for large-scale abundance datasets on the GPU.

Van Hemert JL, Dickerson JA.

Comput Methods Programs Biomed. 2011 Jan;101(1):80-6. doi: 10.1016/j.cmpb.2010.04.010. Epub 2010 Jun 11.

PMID:
20541280
[PubMed - indexed for MEDLINE]
18.

An open source toolkit for medical imaging de-identification.

González DR, Carpenter T, van Hemert JI, Wardlaw J.

Eur Radiol. 2010 Aug;20(8):1896-904. doi: 10.1007/s00330-010-1745-3. Epub 2010 Mar 4.

PMID:
20204640
[PubMed - indexed for MEDLINE]
19.

Correcting for intra-experiment variation in Illumina BeadChip data is necessary to generate robust gene-expression profiles.

Kitchen RR, Sabine VS, Sims AH, Macaskill EJ, Renshaw L, Thomas JS, van Hemert JI, Dixon JM, Bartlett JM.

BMC Genomics. 2010 Feb 24;11:134. doi: 10.1186/1471-2164-11-134.

PMID:
20181233
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

VitisNet: "Omics" integration through grapevine molecular networks.

Grimplet J, Cramer GR, Dickerson JA, Mathiason K, Van Hemert J, Fennell AY.

PLoS One. 2009 Dec 21;4(12):e8365. doi: 10.1371/journal.pone.0008365.

PMID:
20027228
[PubMed - indexed for MEDLINE]
Free PMC Article

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