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Results: 1 to 20 of 109

1.

Mining for viral fragments in methylation enriched sequencing data.

Mensaert K, Van Criekinge W, Thas O, Schuuring E, Steenbergen RD, Wisman GB, De Meyer T.

Front Genet. 2015 Feb 4;6:16. doi: 10.3389/fgene.2015.00016. eCollection 2015.

2.

Chromosome 7 gain and DNA hypermethylation at the HOXA10 locus are associated with expression of a stem cell related HOX-signature in glioblastoma.

Kurscheid S, Bady P, Sciuscio D, Samarzija I, Shay T, Vassallo I, van Criekinge W, Daniel RT, van den Bent MJ, Marosi C, Weller M, Mason WP, Domany E, Stupp R, Delorenzi M, Hegi ME.

Genome Biol. 2015 Jan 27;16(1):16. [Epub ahead of print]

3.

Spectrin repeat containing nuclear envelope 1 and forkhead box protein E1 are promising markers for the detection of colorectal cancer in blood.

Melotte V, Yi JM, Lentjes MH, Smits KM, Van Neste L, Niessen HE, Wouters KA, Louwagie J, Schuebel KE, Herman JG, Baylin SB, van Criekinge W, Meijer GA, Ahuja N, van Engeland M.

Cancer Prev Res (Phila). 2015 Feb;8(2):157-64. doi: 10.1158/1940-6207.CAPR-14-0198. Epub 2014 Dec 23.

4.

Strategies for validation and testing of DNA methylation biomarkers.

Noehammer C, Pulverer W, Hassler MR, Hofner M, Wielscher M, Vierlinger K, Liloglou T, McCarthy D, Jensen TJ, Nygren A, Gohlke H, Trooskens G, Braspenning M, Van Criekinge W, Egger G, Weinhaeusel A.

Epigenomics. 2014;6(6):603-22. doi: 10.2217/epi.14.43.

PMID:
25531255
5.

PROTEOFORMER: deep proteome coverage through ribosome profiling and MS integration.

Crappé J, Ndah E, Koch A, Steyaert S, Gawron D, De Keulenaer S, De Meester E, De Meyer T, Van Criekinge W, Van Damme P, Menschaert G.

Nucleic Acids Res. 2015 Mar 11;43(5):e29. doi: 10.1093/nar/gku1283. Epub 2014 Dec 15.

6.

On cross-sectional associations of leukocyte telomere length with cardiac systolic, diastolic and vascular function: the Asklepios study.

Denil SL, Rietzschel ER, De Buyzere ML, Van Daele CM, Segers P, De Bacquer D, Van Criekinge W, Bekaert S, Gillebert TC, De Meyer T; Asklepios Investigators.

PLoS One. 2014 Dec 15;9(12):e115071. doi: 10.1371/journal.pone.0115071. eCollection 2014.

7.

Forensic massively parallel sequencing data analysis tool: Implementation of MyFLq as a standalone web- and Illumina BaseSpace(®)-application.

Van Neste C, Gansemans Y, De Coninck D, Van Hoofstat D, Van Criekinge W, Deforce D, Van Nieuwerburgh F.

Forensic Sci Int Genet. 2015 Mar;15:2-7. doi: 10.1016/j.fsigen.2014.10.006. Epub 2014 Oct 14.

8.

Identification by array comparative genomic hybridization of a new amplicon on chromosome 17q highly recurrent in BRCA1 mutated triple negative breast cancer.

Toffoli S, Bar I, Abdel-Sater F, Delrée P, Hilbert P, Cavallin F, Moreau F, Van Criekinge W, Lacroix-Triki M, Campone M, Martin AL, Roché H, Machiels JP, Carrasco J, Canon JL.

Breast Cancer Res. 2014 Nov 22;16(6):466. [Epub ahead of print]

9.

Global DNA methylation analysis of human atherosclerotic plaques reveals extensive genomic hypomethylation and reactivation at imprinted locus 14q32 involving induction of a miRNA cluster.

Aavik E, Lumivuori H, Leppänen O, Wirth T, Häkkinen SK, Bräsen JH, Beschorner U, Zeller T, Braspenning M, van Criekinge W, Mäkinen K, Ylä-Herttuala S.

Eur Heart J. 2014 Nov 16. pii: ehu437. [Epub ahead of print]

PMID:
25411193
10.

SNP-guided identification of monoallelic DNA-methylation events from enrichment-based sequencing data.

Steyaert S, Van Criekinge W, De Paepe A, Denil S, Mensaert K, Vandepitte K, Vanden Berghe W, Trooskens G, De Meyer T.

Nucleic Acids Res. 2014 Nov 10;42(20):e157. doi: 10.1093/nar/gku847. Epub 2014 Sep 18.

11.

Methylation-mediated repression of PRDM14 contributes to apoptosis evasion in HPV-positive cancers.

Snellenberg S, Cillessen SA, Van Criekinge W, Bosch L, Meijer CJ, Snijders PJ, Steenbergen RD.

Carcinogenesis. 2014 Nov;35(11):2611-8. doi: 10.1093/carcin/bgu197. Epub 2014 Sep 18.

PMID:
25233927
12.

Systemic suppression of the shoot metabolism upon rice root nematode infection.

Kyndt T, Denil S, Bauters L, Van Criekinge W, De Meyer T.

PLoS One. 2014 Sep 12;9(9):e106858. doi: 10.1371/journal.pone.0106858. eCollection 2014.

13.

We are all individuals… bioinformatics in the personalized medicine era.

Van Neste L, Van Criekinge W.

Cell Oncol (Dordr). 2015 Feb;38(1):29-37. doi: 10.1007/s13402-014-0195-3. Epub 2014 Sep 10.

PMID:
25204962
14.

A proteogenomics approach integrating proteomics and ribosome profiling increases the efficiency of protein identification and enables the discovery of alternative translation start sites.

Koch A, Gawron D, Steyaert S, Ndah E, Crappé J, De Keulenaer S, De Meester E, Ma M, Shen B, Gevaert K, Van Criekinge W, Van Damme P, Menschaert G.

Proteomics. 2014 Dec;14(23-24):2688-98. doi: 10.1002/pmic.201400180. Epub 2014 Oct 2.

PMID:
25156699
15.

Illumina sequencing of 15 deafness genes using fragmented amplicons.

Van Nieuwerburgh F, De Keulenaer S, De Schrijver J, Vandesompele J, Van Criekinge W, Coucke PJ, Deforce D.

BMC Res Notes. 2014 Aug 9;7:509. doi: 10.1186/1756-0500-7-509.

16.

Food-derived opioid peptides inhibit cysteine uptake with redox and epigenetic consequences.

Trivedi MS, Shah JS, Al-Mughairy S, Hodgson NW, Simms B, Trooskens GA, Van Criekinge W, Deth RC.

J Nutr Biochem. 2014 Oct;25(10):1011-8. doi: 10.1016/j.jnutbio.2014.05.004. Epub 2014 Jun 6.

17.

Reduced Rate of Repeated Prostate Biopsies Observed in ConfirmMDx Clinical Utility Field Study.

Wojno KJ, Costa FJ, Cornell RJ, Small JD, Pasin E, Van Criekinge W, Bigley JW, Van Neste L.

Am Health Drug Benefits. 2014 May;7(3):129-34.

18.

Bacterial diversity assessment in Antarctic terrestrial and aquatic microbial mats: a comparison between bidirectional pyrosequencing and cultivation.

Tytgat B, Verleyen E, Obbels D, Peeters K, De Wever A, D'hondt S, De Meyer T, Van Criekinge W, Vyverman W, Willems A.

PLoS One. 2014 Jun 2;9(6):e97564. doi: 10.1371/journal.pone.0097564. eCollection 2014.

19.

Clinical validation of an epigenetic assay to predict negative histopathological results in repeat prostate biopsies.

Partin AW, Van Neste L, Klein EA, Marks LS, Gee JR, Troyer DA, Rieger-Christ K, Jones JS, Magi-Galluzzi C, Mangold LA, Trock BJ, Lance RS, Bigley JW, Van Criekinge W, Epstein JI.

J Urol. 2014 Oct;192(4):1081-7. doi: 10.1016/j.juro.2014.04.013. Epub 2014 Apr 18.

20.

N-terminal proteomics and ribosome profiling provide a comprehensive view of the alternative translation initiation landscape in mice and men.

Van Damme P, Gawron D, Van Criekinge W, Menschaert G.

Mol Cell Proteomics. 2014 May;13(5):1245-61. doi: 10.1074/mcp.M113.036442. Epub 2014 Mar 12.

PMID:
24623590
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