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Items: 1 to 20 of 123

1.

RAB25 expression is epigenetically downregulated in oral and oropharyngeal squamous cell carcinoma with lymph node metastasis.

Clausen MJ, Melchers LJ, Mastik MF, Slagter-Menkema L, Groen HJ, van der Laan BF, van Criekinge W, de Meyer T, Denil S, van der Vegt B, Wisman GB, Roodenburg JL, Schuuring E.

Epigenetics. 2016 Jul 5:0. [Epub ahead of print]

PMID:
27379752
2.

Risk score predicts high-grade prostate cancer in DNA-methylation positive, histopathologically negative biopsies.

Van Neste L, Partin AW, Stewart GD, Epstein JI, Harrison DJ, Van Criekinge W.

Prostate. 2016 Sep;76(12):1078-87. doi: 10.1002/pros.23191. Epub 2016 Apr 28.

PMID:
27121847
3.

WRN promoter CpG island hypermethylation does not predict more favorable outcomes for metastatic colorectal cancer patients treated with irinotecan-based therapy.

Bosch LJ, Luo Y, Valinluck Lao V, Snaebjornsson P, Trooskens G, Vlassenbroeck I, Mongera S, Tang W, Welcsh P, Herman JG, Koopman M, Nagtegaal I, Punt CJ, Van Criekinge W, Meijer GA, Monnat RJ, Carvalho B, Grady WM.

Clin Cancer Res. 2016 Apr 27. pii: clincanres.2703.2015. [Epub ahead of print]

PMID:
27121793
4.

Detection of High-grade Prostate Cancer Using a Urinary Molecular Biomarker-Based Risk Score.

Van Neste L, Hendriks RJ, Dijkstra S, Trooskens G, Cornel EB, Jannink SA, de Jong H, Hessels D, Smit FP, Melchers WJ, Leyten GH, de Reijke TM, Vergunst H, Kil P, Knipscheer BC, Hulsbergen-van de Kaa CA, Mulders PF, van Oort IM, Van Criekinge W, Schalken JA.

Eur Urol. 2016 Apr 20. pii: S0302-2838(16)30071-9. doi: 10.1016/j.eururo.2016.04.012. [Epub ahead of print]

PMID:
27108162
5.

Dynamic epigenetic changes to VHL occur with sunitinib in metastatic clear cell renal cancer.

Stewart GD, Powles T, Van Neste C, Meynert A, O'Mahony F, Laird A, Deforce D, Van Nieuwerburgh F, Trooskens G, Van Criekinge W, De Meyer T, Harrison DJ.

Oncotarget. 2016 Mar 23. doi: 10.18632/oncotarget.8308. [Epub ahead of print]

6.

Corrigendum: A genome-wide search for epigenetically regulated genes in zebra finch using MethylCap-seq and RNA-seq.

Steyaert S, Diddens J, Galle J, De Meester E, De Keulenaer S, Bakker A, Sohnius-Wilhelmi N, Frankl-Vilches C, Van der Linden A, Van Criekinge W, Berghe WV, De Meyer T.

Sci Rep. 2016 Mar 17;6:22472. doi: 10.1038/srep22472. No abstract available.

7.

Discovery of new methylation markers to improve screening for cervical intraepithelial neoplasia grade 2/3.

Boers A, Wang R, van Leeuwen RW, Klip HG, de Bock GH, Hollema H, van Criekinge W, de Meyer T, Denil S, van der Zee AG, Schuuring E, Wisman GB.

Clin Epigenetics. 2016 Mar 9;8:29. doi: 10.1186/s13148-016-0196-3. eCollection 2016.

8.

A genome-wide search for eigenetically regulated genes in zebra finch using MethylCap-seq and RNA-seq.

Steyaert S, Diddens J, Galle J, De Meester E, De Keulenaer S, Bakker A, Sohnius-Wilhelmi N, Frankl-Vilches C, Van der Linden A, Van Criekinge W, Vanden Berghe W, De Meyer T.

Sci Rep. 2016 Feb 11;6:20957. doi: 10.1038/srep20957.

9.

DNA methylation profiling of primary neuroblastoma tumors using methyl-CpG-binding domain sequencing.

Decock A, Ongenaert M, Van Criekinge W, Speleman F, Vandesompele J.

Sci Data. 2016 Feb 2;3:160004. doi: 10.1038/sdata.2016.4.

10.

BMP-SMAD Signaling Regulates Lineage Priming, but Is Dispensable for Self-Renewal in Mouse Embryonic Stem Cells.

Gomes Fernandes M, Dries R, Roost MS, Semrau S, de Melo Bernardo A, Davis RP, Ramakrishnan R, Szuhai K, Maas E, Umans L, Abon Escalona V, Salvatori D, Deforce D, Van Criekinge W, Huylebroeck D, Mummery C, Zwijsen A, de Sousa Lopes SM.

Stem Cell Reports. 2016 Jan 12;6(1):85-94. doi: 10.1016/j.stemcr.2015.11.012. Epub 2015 Dec 17.

11.

Genome-wide DNA methylation detection by MethylCap-seq and Infinium HumanMethylation450 BeadChips: an independent large-scale comparison.

De Meyer T, Bady P, Trooskens G, Kurscheid S, Bloch J, Kros JM, Hainfellner JA, Stupp R, Delorenzi M, Hegi ME, Van Criekinge W.

Sci Rep. 2015 Oct 20;5:15375. doi: 10.1038/srep15375.

12.

Forensic Loci Allele Database (FLAD): Automatically generated, permanent identifiers for sequenced forensic alleles.

Van Neste C, Van Criekinge W, Deforce D, Van Nieuwerburgh F.

Forensic Sci Int Genet. 2016 Jan;20:e1-3. doi: 10.1016/j.fsigen.2015.09.006. Epub 2015 Sep 21.

PMID:
26456067
13.

Identification and validation of WISP1 as an epigenetic regulator of metastasis in oral squamous cell carcinoma.

Clausen MJ, Melchers LJ, Mastik MF, Slagter-Menkema L, Groen HJ, van der Laan BF, van Criekinge W, de Meyer T, Denil S, Wisman GB, Roodenburg JL, Schuuring E.

Genes Chromosomes Cancer. 2016 Jan;55(1):45-59. doi: 10.1002/gcc.22310. Epub 2015 Sep 22.

PMID:
26391330
14.

Evaluation of an Epigenetic Profile for the Detection of Bladder Cancer in Patients with Hematuria.

van Kessel KE, Van Neste L, Lurkin I, Zwarthoff EC, Van Criekinge W.

J Urol. 2016 Mar;195(3):601-7. doi: 10.1016/j.juro.2015.08.085. Epub 2015 Aug 29.

PMID:
26327355
15.

MEXPRESS: visualizing expression, DNA methylation and clinical TCGA data.

Koch A, De Meyer T, Jeschke J, Van Criekinge W.

BMC Genomics. 2015 Aug 26;16:636. doi: 10.1186/s12864-015-1847-z.

16.

Mining for viral fragments in methylation enriched sequencing data.

Mensaert K, Van Criekinge W, Thas O, Schuuring E, Steenbergen RD, Wisman GB, De Meyer T.

Front Genet. 2015 Feb 4;6:16. doi: 10.3389/fgene.2015.00016. eCollection 2015.

17.

Spectrin repeat containing nuclear envelope 1 and forkhead box protein E1 are promising markers for the detection of colorectal cancer in blood.

Melotte V, Yi JM, Lentjes MH, Smits KM, Van Neste L, Niessen HE, Wouters KA, Louwagie J, Schuebel KE, Herman JG, Baylin SB, van Criekinge W, Meijer GA, Ahuja N, van Engeland M.

Cancer Prev Res (Phila). 2015 Feb;8(2):157-64. doi: 10.1158/1940-6207.CAPR-14-0198. Epub 2014 Dec 23.

18.

Strategies for validation and testing of DNA methylation biomarkers.

Noehammer C, Pulverer W, Hassler MR, Hofner M, Wielscher M, Vierlinger K, Liloglou T, McCarthy D, Jensen TJ, Nygren A, Gohlke H, Trooskens G, Braspenning M, Van Criekinge W, Egger G, Weinhaeusel A.

Epigenomics. 2014;6(6):603-22. doi: 10.2217/epi.14.43. Review.

PMID:
25531255
19.

PROTEOFORMER: deep proteome coverage through ribosome profiling and MS integration.

Crappé J, Ndah E, Koch A, Steyaert S, Gawron D, De Keulenaer S, De Meester E, De Meyer T, Van Criekinge W, Van Damme P, Menschaert G.

Nucleic Acids Res. 2015 Mar 11;43(5):e29. doi: 10.1093/nar/gku1283. Epub 2014 Dec 15.

20.

On cross-sectional associations of leukocyte telomere length with cardiac systolic, diastolic and vascular function: the Asklepios study.

Denil SL, Rietzschel ER, De Buyzere ML, Van Daele CM, Segers P, De Bacquer D, Van Criekinge W, Bekaert S, Gillebert TC, De Meyer T; Asklepios Investigators.

PLoS One. 2014 Dec 15;9(12):e115071. doi: 10.1371/journal.pone.0115071. eCollection 2014.

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