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Items: 14

1.

PP2A-3 interacts with ACR4 and regulates formative cell division in the Arabidopsis root.

Yue K, Sandal P, Williams EL, Murphy E, Stes E, Nikonorova N, Ramakrishna P, Czyzewicz N, Montero-Morales L, Kumpf R, Lin Z, van de Cotte B, Iqbal M, Van Bel M, Van De Slijke E, Meyer MR, Gadeyne A, Zipfel C, De Jaeger G, Van Montagu M, Van Damme D, Gevaert K, Rao AG, Beeckman T, De Smet I.

Proc Natl Acad Sci U S A. 2016 Feb 2;113(5):1447-52. doi: 10.1073/pnas.1525122113. Epub 2016 Jan 20.

PMID:
26792519
2.

It's Time for Some "Site"-Seeing: Novel Tools to Monitor the Ubiquitin Landscape in Arabidopsis thaliana.

Walton A, Stes E, Cybulski N, Van Bel M, Iñigo S, Durand AN, Timmerman E, Heyman J, Pauwels L, De Veylder L, Goossens A, De Smet I, Coppens F, Goormachtig S, Gevaert K.

Plant Cell. 2016 Jan;28(1):6-16. doi: 10.1105/tpc.15.00878. Epub 2016 Jan 7.

PMID:
26744219
3.

A Conserved Core of Programmed Cell Death Indicator Genes Discriminates Developmentally and Environmentally Induced Programmed Cell Death in Plants.

Olvera-Carrillo Y, Van Bel M, Van Hautegem T, Fendrych M, Huysmans M, Simaskova M, van Durme M, Buscaill P, Rivas S, S Coll N, Coppens F, Maere S, Nowack MK.

Plant Physiol. 2015 Dec;169(4):2684-99. doi: 10.1104/pp.15.00769. Epub 2015 Oct 5.

4.

BLSSpeller: exhaustive comparative discovery of conserved cis-regulatory elements.

De Witte D, Van de Velde J, Decap D, Van Bel M, Audenaert P, Demeester P, Dhoedt B, Vandepoele K, Fostier J.

Bioinformatics. 2015 Dec 1;31(23):3758-66. doi: 10.1093/bioinformatics/btv466. Epub 2015 Aug 8.

5.

Dynamic Changes in ANGUSTIFOLIA3 Complex Composition Reveal a Growth Regulatory Mechanism in the Maize Leaf.

Nelissen H, Eeckhout D, Demuynck K, Persiau G, Walton A, van Bel M, Vervoort M, Candaele J, De Block J, Aesaert S, Van Lijsebettens M, Goormachtig S, Vandepoele K, Van Leene J, Muszynski M, Gevaert K, Inzé D, De Jaeger G.

Plant Cell. 2015 Jun;27(6):1605-19. doi: 10.1105/tpc.15.00269. Epub 2015 Jun 2.

6.

Drought tolerance conferred to sugarcane by association with Gluconacetobacter diazotrophicus: a transcriptomic view of hormone pathways.

Vargas L, Santa Brígida AB, Mota Filho JP, de Carvalho TG, Rojas CA, Vaneechoutte D, Van Bel M, Farrinelli L, Ferreira PC, Vandepoele K, Hemerly AS.

PLoS One. 2014 Dec 9;9(12):e114744. doi: 10.1371/journal.pone.0114744. eCollection 2014.

7.

PLAZA 3.0: an access point for plant comparative genomics.

Proost S, Van Bel M, Vaneechoutte D, Van de Peer Y, Inzé D, Mueller-Roeber B, Vandepoele K.

Nucleic Acids Res. 2015 Jan;43(Database issue):D974-81. doi: 10.1093/nar/gku986. Epub 2014 Oct 16.

8.

TRAPID: an efficient online tool for the functional and comparative analysis of de novo RNA-Seq transcriptomes.

Van Bel M, Proost S, Van Neste C, Deforce D, Van de Peer Y, Vandepoele K.

Genome Biol. 2013 Dec 13;14(12):R134. doi: 10.1186/gb-2013-14-12-r134.

9.

pico-PLAZA, a genome database of microbial photosynthetic eukaryotes.

Vandepoele K, Van Bel M, Richard G, Van Landeghem S, Verhelst B, Moreau H, Van de Peer Y, Grimsley N, Piganeau G.

Environ Microbiol. 2013 Aug;15(8):2147-53. doi: 10.1111/1462-2920.12174. Epub 2013 Jul 4.

PMID:
23826978
10.

Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage.

Moreau H, Verhelst B, Couloux A, Derelle E, Rombauts S, Grimsley N, Van Bel M, Poulain J, Katinka M, Hohmann-Marriott MF, Piganeau G, Rouzé P, Da Silva C, Wincker P, Van de Peer Y, Vandepoele K.

Genome Biol. 2012 Aug 24;13(8):R74. doi: 10.1186/gb-2012-13-8-r74.

11.

Comparative co-expression analysis in plant biology.

Movahedi S, Van Bel M, Heyndrickx KS, Vandepoele K.

Plant Cell Environ. 2012 Oct;35(10):1787-98. doi: 10.1111/j.1365-3040.2012.02517.x. Epub 2012 May 10. Review.

12.

Dissecting plant genomes with the PLAZA comparative genomics platform.

Van Bel M, Proost S, Wischnitzki E, Movahedi S, Scheerlinck C, Van de Peer Y, Vandepoele K.

Plant Physiol. 2012 Feb;158(2):590-600. doi: 10.1104/pp.111.189514. Epub 2011 Dec 23.

13.

PLAZA: a comparative genomics resource to study gene and genome evolution in plants.

Proost S, Van Bel M, Sterck L, Billiau K, Van Parys T, Van de Peer Y, Vandepoele K.

Plant Cell. 2009 Dec;21(12):3718-31. doi: 10.1105/tpc.109.071506. Epub 2009 Dec 29.

14.

FunSiP: a modular and extensible classifier for the prediction of functional sites in DNA.

Van Bel M, Saeys Y, Van de Peer Y.

Bioinformatics. 2008 Jul 1;24(13):1532-3. doi: 10.1093/bioinformatics/btn225. Epub 2008 May 12.

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