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Results: 1 to 20 of 269

1.

Comparative phenomics and targeted use of genomics reveals variation in carbon and nitrogen assimilation among different Brettanomyces bruxellensis strains.

Crauwels S, Van Assche A, de Jonge R, Borneman AR, Verreth C, Troels P, De Samblanx G, Marchal K, Van de Peer Y, Willems KA, Verstrepen KJ, Curtin CD, Lievens B.

Appl Microbiol Biotechnol. 2015 Jul 2. [Epub ahead of print]

PMID:
26135985
2.

Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeasts.

Morel G, Sterck L, Swennen D, Marcet-Houben M, Onesime D, Levasseur A, Jacques N, Mallet S, Couloux A, Labadie K, Amselem J, Beckerich JM, Henrissat B, Van de Peer Y, Wincker P, Souciet JL, Gabaldón T, Tinsley CR, Casaregola S.

Sci Rep. 2015 Jun 25;5:11571. doi: 10.1038/srep11571.

3.

Horsetails Are Ancient Polyploids: Evidence from Equisetum giganteum.

Vanneste K, Sterck L, Myburg AA, Van de Peer Y, Mizrachi E.

Plant Cell. 2015 May 22. pii: tpc.15.00157. [Epub ahead of print]

4.

Genome-Wide Mapping of Structural Variations Reveals a Copy Number Variant That Determines Reproductive Morphology in Cucumber.

Zhang Z, Mao L, Chen H, Bu F, Li G, Sun J, Li S, Sun H, Jiao C, Blakely R, Pan J, Cai R, Luo R, Van de Peer Y, Jacobsen E, Fei Z, Huang S.

Plant Cell. 2015 May 22. pii: tpc.114.135848. [Epub ahead of print]

PMID:
26002866
5.

Genome-wide analysis reveals diverged patterns of codon bias, gene expression, and rates of sequence evolution in picea gene families.

De La Torre AR, Lin YC, Van de Peer Y, Ingvarsson PK.

Genome Biol Evol. 2015 Mar 5;7(4):1002-15. doi: 10.1093/gbe/evv044.

6.

Corrigendum: The genome sequence of the orchid Phalaenopsis equestris.

Cai J, Liu X, Vanneste K, Proost S, Tsai WC, Liu KW, Chen LJ, He Y, Xu Q, Bian C, Zheng Z, Sun F, Liu W, Hsiao YY, Pan ZJ, Hsu CC, Yang YP, Hsu YC, Chuang YC, Dievart A, Dufayard JF, Xu X, Wang JY, Wang J, Xiao XJ, Zhao XM, Du R, Zhang GQ, Wang M, Su YY, Xie GC, Liu GH, Li LQ, Huang LQ, Luo YB, Chen HH, Van de Peer Y, Liu ZJ.

Nat Genet. 2015 Mar;47(3):304. doi: 10.1038/ng0315-304a. No abstract available.

PMID:
25711871
7.

Arabidopsis ensemble reverse-engineered gene regulatory network discloses interconnected transcription factors in oxidative stress.

Vermeirssen V, De Clercq I, Van Parys T, Van Breusegem F, Van de Peer Y.

Plant Cell. 2014 Dec;26(12):4656-79. doi: 10.1105/tpc.114.131417. Epub 2014 Dec 30.

PMID:
25549671
8.

An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies.

Blanc-Mathieu R, Verhelst B, Derelle E, Rombauts S, Bouget FY, Carré I, Château A, Eyre-Walker A, Grimsley N, Moreau H, Piégu B, Rivals E, Schackwitz W, Van de Peer Y, Piganeau G.

BMC Genomics. 2014 Dec 13;15:1103. doi: 10.1186/1471-2164-15-1103.

9.

The genome sequence of the orchid Phalaenopsis equestris.

Cai J, Liu X, Vanneste K, Proost S, Tsai WC, Liu KW, Chen LJ, He Y, Xu Q, Bian C, Zheng Z, Sun F, Liu W, Hsiao YY, Pan ZJ, Hsu CC, Yang YP, Hsu YC, Chuang YC, Dievart A, Dufayard JF, Xu X, Wang JY, Wang J, Xiao XJ, Zhao XM, Du R, Zhang GQ, Wang M, Su YY, Xie GC, Liu GH, Li LQ, Huang LQ, Luo YB, Chen HH, Van de Peer Y, Liu ZJ.

Nat Genet. 2015 Jan;47(1):65-72. doi: 10.1038/ng.3149. Epub 2014 Nov 24. Erratum in: Nat Genet. 2015 Mar;47(3):304.

PMID:
25420146
10.

PLAZA 3.0: an access point for plant comparative genomics.

Proost S, Van Bel M, Vaneechoutte D, Van de Peer Y, Inzé D, Mueller-Roeber B, Vandepoele K.

Nucleic Acids Res. 2015 Jan;43(Database issue):D974-81. doi: 10.1093/nar/gku986. Epub 2014 Oct 16.

11.

Genome dynamics of the human embryonic kidney 293 lineage in response to cell biology manipulations.

Lin YC, Boone M, Meuris L, Lemmens I, Van Roy N, Soete A, Reumers J, Moisse M, Plaisance S, Drmanac R, Chen J, Speleman F, Lambrechts D, Van de Peer Y, Tavernier J, Callewaert N.

Nat Commun. 2014 Sep 3;5:4767. doi: 10.1038/ncomms5767.

12.

A haploid system of sex determination in the brown alga Ectocarpus sp.

Ahmed S, Cock JM, Pessia E, Luthringer R, Cormier A, Robuchon M, Sterck L, Peters AF, Dittami SM, Corre E, Valero M, Aury JM, Roze D, Van de Peer Y, Bothwell J, Marais GA, Coelho SM.

Curr Biol. 2014 Sep 8;24(17):1945-57. doi: 10.1016/j.cub.2014.07.042. Epub 2014 Aug 28.

PMID:
25176635
13.

Comparative in silico analysis of EST-SSRs in angiosperm and gymnosperm tree genera.

Ranade SS, Lin YC, Zuccolo A, Van de Peer Y, García-Gil Mdel R.

BMC Plant Biol. 2014 Aug 21;14:220. doi: 10.1186/s12870-014-0220-8.

14.

ASP-G: an ASP-based method for finding attractors in genetic regulatory networks.

Mushthofa M, Torres G, Van de Peer Y, Marchal K, De Cock M.

Bioinformatics. 2014 Nov 1;30(21):3086-92. doi: 10.1093/bioinformatics/btu481. Epub 2014 Jul 15.

PMID:
25028722
15.

Tangled up in two: a burst of genome duplications at the end of the Cretaceous and the consequences for plant evolution.

Vanneste K, Maere S, Van de Peer Y.

Philos Trans R Soc Lond B Biol Sci. 2014 Aug 5;369(1648). pii: 20130353. doi: 10.1098/rstb.2013.0353. Review.

16.

The genome of Eucalyptus grandis.

Myburg AA, Grattapaglia D, Tuskan GA, Hellsten U, Hayes RD, Grimwood J, Jenkins J, Lindquist E, Tice H, Bauer D, Goodstein DM, Dubchak I, Poliakov A, Mizrachi E, Kullan AR, Hussey SG, Pinard D, van der Merwe K, Singh P, van Jaarsveld I, Silva-Junior OB, Togawa RC, Pappas MR, Faria DA, Sansaloni CP, Petroli CD, Yang X, Ranjan P, Tschaplinski TJ, Ye CY, Li T, Sterck L, Vanneste K, Murat F, Soler M, Clemente HS, Saidi N, Cassan-Wang H, Dunand C, Hefer CA, Bornberg-Bauer E, Kersting AR, Vining K, Amarasinghe V, Ranik M, Naithani S, Elser J, Boyd AE, Liston A, Spatafora JW, Dharmwardhana P, Raja R, Sullivan C, Romanel E, Alves-Ferreira M, Külheim C, Foley W, Carocha V, Paiva J, Kudrna D, Brommonschenkel SH, Pasquali G, Byrne M, Rigault P, Tibbits J, Spokevicius A, Jones RC, Steane DA, Vaillancourt RE, Potts BM, Joubert F, Barry K, Pappas GJ, Strauss SH, Jaiswal P, Grima-Pettenati J, Salse J, Van de Peer Y, Rokhsar DS, Schmutz J.

Nature. 2014 Jun 19;510(7505):356-62. doi: 10.1038/nature13308. Epub 2014 Jun 11.

PMID:
24919147
17.

The (r)evolution of gene regulatory networks controlling Arabidopsis plant reproduction: a two-decade history.

Pajoro A, Biewers S, Dougali E, Leal Valentim F, Mendes MA, Porri A, Coupland G, Van de Peer Y, van Dijk AD, Colombo L, Davies B, Angenent GC.

J Exp Bot. 2014 Sep;65(17):4731-45. doi: 10.1093/jxb/eru233. Epub 2014 Jun 9. Review.

PMID:
24913630
18.

Analysis of 41 plant genomes supports a wave of successful genome duplications in association with the Cretaceous-Paleogene boundary.

Vanneste K, Baele G, Maere S, Van de Peer Y.

Genome Res. 2014 Aug;24(8):1334-47. doi: 10.1101/gr.168997.113. Epub 2014 May 16.

19.

Systematic structural characterization of metabolites in Arabidopsis via candidate substrate-product pair networks.

Morreel K, Saeys Y, Dima O, Lu F, Van de Peer Y, Vanholme R, Ralph J, Vanholme B, Boerjan W.

Plant Cell. 2014 Mar;26(3):929-45. doi: 10.1105/tpc.113.122242. Epub 2014 Mar 31.

20.

Improving the adaptability of simulated evolutionary swarm robots in dynamically changing environments.

Yao Y, Marchal K, Van de Peer Y.

PLoS One. 2014 Mar 5;9(3):e90695. doi: 10.1371/journal.pone.0090695. eCollection 2014.

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