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Results: 1 to 20 of 31

1.

Inputs drive cell phenotype variability.

Park J, Brureau A, Kernan K, Starks A, Gulati S, Ogunnaike B, Schwaber J, Vadigepalli R.

Genome Res. 2014 Jun;24(6):930-41. doi: 10.1101/gr.161802.113. Epub 2014 Mar 26.

PMID:
24671852
[PubMed - in process]
2.

Molecular modeling of ErbB4/HER4 kinase in the context of the HER4 signaling network helps rationalize the effects of clinically identified HER4 somatic mutations on the cell phenotype.

Telesco SE, Vadigepalli R, Radhakrishnan R.

Biotechnol J. 2013 Dec;8(12):1452-64. doi: 10.1002/biot.201300022. Epub 2013 Dec 4.

PMID:
24318637
[PubMed - indexed for MEDLINE]
3.

Ethanol diverts early neuronal differentiation trajectory of embryonic stem cells by disrupting the balance of lineage specifiers.

Sánchez-Alvarez R, Gayen S, Vadigepalli R, Anni H.

PLoS One. 2013 May 28;8(5):e63794. doi: 10.1371/journal.pone.0063794. Print 2013.

PMID:
23724002
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Ethanol alters the balance of Sox2, Oct4, and Nanog expression in distinct subpopulations during differentiation of embryonic stem cells.

Ogony JW, Malahias E, Vadigepalli R, Anni H.

Stem Cells Dev. 2013 Aug 1;22(15):2196-210. doi: 10.1089/scd.2012.0513. Epub 2013 Apr 9.

PMID:
23470161
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

MicroRNA profiling in lung cancer reveals new molecular markers for diagnosis.

Solomides CC, Evans BJ, Navenot JM, Vadigepalli R, Peiper SC, Wang ZX.

Acta Cytol. 2012;56(6):645-54. doi: 10.1159/000343473. Epub 2012 Nov 24.

PMID:
23207443
[PubMed - indexed for MEDLINE]
6.

Decorin protein core affects the global gene expression profile of the tumor microenvironment in a triple-negative orthotopic breast carcinoma xenograft model.

Buraschi S, Neill T, Owens RT, Iniguez LA, Purkins G, Vadigepalli R, Evans B, Schaefer L, Peiper SC, Wang ZX, Iozzo RV.

PLoS One. 2012;7(9):e45559. doi: 10.1371/journal.pone.0045559. Epub 2012 Sep 19.

PMID:
23029096
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Coordinated dynamic gene expression changes in the central nucleus of the amygdala during alcohol withdrawal.

Freeman K, Staehle MM, Vadigepalli R, Gonye GE, Ogunnaike BA, Hoek JB, Schwaber JS.

Alcohol Clin Exp Res. 2013 Jan;37 Suppl 1:E88-100. doi: 10.1111/j.1530-0277.2012.01910.x. Epub 2012 Jul 24.

PMID:
22827539
[PubMed - indexed for MEDLINE]
8.

Chronic ethanol feeding alters miRNA expression dynamics during liver regeneration.

Dippold RP, Vadigepalli R, Gonye GE, Patra B, Hoek JB.

Alcohol Clin Exp Res. 2013 Jan;37 Suppl 1:E59-69. doi: 10.1111/j.1530-0277.2012.01852.x. Epub 2012 Jul 23.

PMID:
22823254
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Chronic ethanol feeding enhances miR-21 induction during liver regeneration while inhibiting proliferation in rats.

Dippold RP, Vadigepalli R, Gonye GE, Hoek JB.

Am J Physiol Gastrointest Liver Physiol. 2012 Sep 15;303(6):G733-43. doi: 10.1152/ajpgi.00019.2012. Epub 2012 Jul 12.

PMID:
22790595
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Integrative gene regulatory network analysis reveals light-induced regional gene expression phase shift programs in the mouse suprachiasmatic nucleus.

Zhu H, Vadigepalli R, Rafferty R, Gonye GE, Weaver DR, Schwaber JS.

PLoS One. 2012;7(5):e37833. doi: 10.1371/journal.pone.0037833. Epub 2012 May 25.

PMID:
22662235
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Effects of developmental lead exposure on the hippocampal transcriptome: influences of sex, developmental period, and lead exposure level.

Schneider JS, Anderson DW, Talsania K, Mettil W, Vadigepalli R.

Toxicol Sci. 2012 Sep;129(1):108-25. doi: 10.1093/toxsci/kfs189. Epub 2012 May 28.

PMID:
22641619
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Temporal changes in innate immune signals in a rat model of alcohol withdrawal in emotional and cardiorespiratory homeostatic nuclei.

Freeman K, Brureau A, Vadigepalli R, Staehle MM, Brureau MM, Gonye GE, Hoek JB, Hooper DC, Schwaber JS.

J Neuroinflammation. 2012 May 24;9:97. doi: 10.1186/1742-2094-9-97.

PMID:
22626265
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Rapid temporal changes in the expression of a set of neuromodulatory genes during alcohol withdrawal in the dorsal vagal complex: molecular evidence of homeostatic disturbance.

Freeman K, Staehle MM, Gümüş ZH, Vadigepalli R, Gonye GE, Nichols CN, Ogunnaike BA, Hoek JB, Schwaber JS.

Alcohol Clin Exp Res. 2012 Oct;36(10):1688-700. doi: 10.1111/j.1530-0277.2012.01791.x. Epub 2012 Apr 6.

PMID:
22486438
[PubMed - indexed for MEDLINE]
14.

Adaptive transcriptional dynamics of A2 neurons and central cardiovascular control pathways.

Vadigepalli R, Gonye GE, Paton JF, Schwaber JS.

Exp Physiol. 2012 Apr;97(4):462-8. doi: 10.1113/expphysiol.2011.059790. Epub 2011 Oct 14. Review.

PMID:
22002872
[PubMed - indexed for MEDLINE]
Free Article
15.

Sex-based differences in gene expression in hippocampus following postnatal lead exposure.

Schneider JS, Anderson DW, Sonnenahalli H, Vadigepalli R.

Toxicol Appl Pharmacol. 2011 Oct 15;256(2):179-90. doi: 10.1016/j.taap.2011.08.008. Epub 2011 Aug 12.

PMID:
21864555
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Robust dynamic balance of AP-1 transcription factors in a neuronal gene regulatory network.

Miller GM, Ogunnaike BA, Schwaber JS, Vadigepalli R.

BMC Syst Biol. 2010 Dec 17;4:171. doi: 10.1186/1752-0509-4-171.

PMID:
21167049
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Structural properties of gene regulatory networks: definitions and connections.

Narasimhan S, Rengaswamy R, Vadigepalli R.

IEEE/ACM Trans Comput Biol Bioinform. 2009 Jan-Mar;6(1):158-70. doi: 10.1109/TCBB.2007.70231.

PMID:
19179709
[PubMed - indexed for MEDLINE]
18.

Temporal and functional profile of the transcriptional regulatory network in the early regenerative response to partial hepatectomy in the rat.

Juskeviciute E, Vadigepalli R, Hoek JB.

BMC Genomics. 2008 Nov 6;9:527. doi: 10.1186/1471-2164-9-527.

PMID:
18990226
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Transcriptional regulatory network analysis during epithelial-mesenchymal transformation of retinal pigment epithelium.

Pratt CH, Vadigepalli R, Chakravarthula P, Gonye GE, Philp NJ, Grunwald GB.

Mol Vis. 2008 Aug 4;14:1414-28.

PMID:
18682805
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Dynamic transcriptomic response to acute hypertension in the nucleus tractus solitarius.

Khan RL, Vadigepalli R, McDonald MK, Rogers RF, Gao GR, Schwaber JS.

Am J Physiol Regul Integr Comp Physiol. 2008 Jul;295(1):R15-27. doi: 10.1152/ajpregu.00152.2008. Epub 2008 Apr 23.

PMID:
18434436
[PubMed - indexed for MEDLINE]
Free PMC Article

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