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Results: 1 to 20 of 55

1.

A Global Regulatory Mechanism for Activating an Exon Network Required for Neurogenesis.

Raj B, Irimia M, Braunschweig U, Sterne-Weiler T, O'Hanlon D, Lin ZY, Chen GI, Easton LE, Ule J, Gingras AC, Eyras E, Blencowe BJ.

Mol Cell. 2014 Sep 9. pii: S1097-2765(14)00644-3. doi: 10.1016/j.molcel.2014.08.011. [Epub ahead of print]

PMID:
25219497
[PubMed - as supplied by publisher]
2.

Rbfox2-Coordinated Alternative Splicing of Mef2d and Rock2 Controls Myoblast Fusion during Myogenesis.

Singh RK, Xia Z, Bland CS, Kalsotra A, Scavuzzo MA, Curk T, Ule J, Li W, Cooper TA.

Mol Cell. 2014 Aug 21;55(4):592-603. doi: 10.1016/j.molcel.2014.06.035. Epub 2014 Jul 31.

PMID:
25087874
[PubMed - in process]
3.

Aberrant methylation of tRNAs links cellular stress to neuro-developmental disorders.

Blanco S, Dietmann S, Flores JV, Hussain S, Kutter C, Humphreys P, Lukk M, Lombard P, Treps L, Popis M, Kellner S, Hölter SM, Garrett L, Wurst W, Becker L, Klopstock T, Fuchs H, Gailus-Durner V, Hrabĕ de Angelis M, Káradóttir RT, Helm M, Ule J, Gleeson JG, Odom DT, Frye M.

EMBO J. 2014 Sep 17;33(18):2020-39. doi: 10.15252/embj.201489282. Epub 2014 Jul 25.

PMID:
25063673
[PubMed - in process]
4.

Crosslinking-immunoprecipitation (iCLIP) analysis reveals global regulatory roles of hnRNP L.

Rossbach O, Hung LH, Khrameeva E, Schreiner S, König J, Curk T, Zupan B, Ule J, Gelfand MS, Bindereif A.

RNA Biol. 2014 Feb;11(2):146-55. doi: 10.4161/rna.27991. Epub 2014 Feb 7.

PMID:
24526010
[PubMed - in process]
Free PMC Article
5.

'Oming in on RNA-protein interactions.

Rinn JL, Ule J.

Genome Biol. 2014 Jan 31;15(1):401. doi: 10.1186/gb4158. No abstract available.

PMID:
24485348
[PubMed - in process]
Free PMC Article
6.

RNAmotifs: prediction of multivalent RNA motifs that control alternative splicing.

Cereda M, Pozzoli U, Rot G, Juvan P, Schweitzer A, Clark T, Ule J.

Genome Biol. 2014 Jan 31;15(1):R20. doi: 10.1186/gb-2014-15-1-r20.

PMID:
24485098
[PubMed - in process]
Free PMC Article
7.

Hexanucleotide repeats in ALS/FTD form length-dependent RNA foci, sequester RNA binding proteins, and are neurotoxic.

Lee YB, Chen HJ, Peres JN, Gomez-Deza J, Attig J, Stalekar M, Troakes C, Nishimura AL, Scotter EL, Vance C, Adachi Y, Sardone V, Miller JW, Smith BN, Gallo JM, Ule J, Hirth F, Rogelj B, Houart C, Shaw CE.

Cell Rep. 2013 Dec 12;5(5):1178-86. doi: 10.1016/j.celrep.2013.10.049. Epub 2013 Nov 27.

PMID:
24290757
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Alu elements: at the crossroads between disease and evolution.

Ule J.

Biochem Soc Trans. 2013 Dec;41(6):1532-5. doi: 10.1042/BST20130157. Review.

PMID:
24256249
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Molecular basis of UG-rich RNA recognition by the human splicing factor TDP-43.

Lukavsky PJ, Daujotyte D, Tollervey JR, Ule J, Stuani C, Buratti E, Baralle FE, Damberger FF, Allain FH.

Nat Struct Mol Biol. 2013 Dec;20(12):1443-9. doi: 10.1038/nsmb.2698. Epub 2013 Nov 17.

PMID:
24240615
[PubMed - indexed for MEDLINE]
10.

What, where, and when: the importance of post-transcriptional regulation in the brain.

Kiebler MA, Scheiffele P, Ule J.

Front Neurosci. 2013 Oct 29;7:192. doi: 10.3389/fnins.2013.00192. eCollection 2013. No abstract available.

PMID:
24194693
[PubMed]
Free PMC Article
11.

iCLIP: protein-RNA interactions at nucleotide resolution.

Huppertz I, Attig J, D'Ambrogio A, Easton LE, Sibley CR, Sugimoto Y, Tajnik M, König J, Ule J.

Methods. 2014 Feb;65(3):274-87. doi: 10.1016/j.ymeth.2013.10.011. Epub 2013 Oct 25.

PMID:
24184352
[PubMed - in process]
Free PMC Article
12.

NSun2-mediated cytosine-5 methylation of vault noncoding RNA determines its processing into regulatory small RNAs.

Hussain S, Sajini AA, Blanco S, Dietmann S, Lombard P, Sugimoto Y, Paramor M, Gleeson JG, Odom DT, Ule J, Frye M.

Cell Rep. 2013 Jul 25;4(2):255-61. doi: 10.1016/j.celrep.2013.06.029. Epub 2013 Jul 18.

PMID:
23871666
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Sixty years of genome biology.

Doolittle WF, Fraser P, Gerstein MB, Graveley BR, Henikoff S, Huttenhower C, Oshlack A, Ponting CP, Rinn JL, Schatz MC, Ule J, Weigel D, Weinstock GM.

Genome Biol. 2013 Apr 25;14(4):113. doi: 10.1186/gb-2013-14-4-113.

PMID:
23651518
[PubMed - in process]
Free PMC Article
14.

Requirement of heterogeneous nuclear ribonucleoprotein C for BRCA gene expression and homologous recombination.

Anantha RW, Alcivar AL, Ma J, Cai H, Simhadri S, Ule J, König J, Xia B.

PLoS One. 2013 Apr 9;8(4):e61368. doi: 10.1371/journal.pone.0061368. Print 2013.

PMID:
23585894
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

CLIPing the brain: studies of protein-RNA interactions important for neurodegenerative disorders.

Modic M, Ule J, Sibley CR.

Mol Cell Neurosci. 2013 Sep;56:429-35. doi: 10.1016/j.mcn.2013.04.002. Epub 2013 Apr 10. Review.

PMID:
23583633
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Direct competition between hnRNP C and U2AF65 protects the transcriptome from the exonization of Alu elements.

Zarnack K, König J, Tajnik M, Martincorena I, Eustermann S, Stévant I, Reyes A, Anders S, Luscombe NM, Ule J.

Cell. 2013 Jan 31;152(3):453-66. doi: 10.1016/j.cell.2012.12.023.

PMID:
23374342
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

CELF4 regulates translation and local abundance of a vast set of mRNAs, including genes associated with regulation of synaptic function.

Wagnon JL, Briese M, Sun W, Mahaffey CL, Curk T, Rot G, Ule J, Frankel WN.

PLoS Genet. 2012;8(11):e1003067. doi: 10.1371/journal.pgen.1003067. Epub 2012 Nov 29.

PMID:
23209433
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Perturbation of chromatin structure globally affects localization and recruitment of splicing factors.

Schor IE, Llères D, Risso GJ, Pawellek A, Ule J, Lamond AI, Kornblihtt AR.

PLoS One. 2012;7(11):e48084. doi: 10.1371/journal.pone.0048084. Epub 2012 Nov 12.

PMID:
23152763
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Aberrant sodium channel activity in the complex seizure disorder of Celf4 mutant mice.

Sun W, Wagnon JL, Mahaffey CL, Briese M, Ule J, Frankel WN.

J Physiol. 2013 Jan 1;591(Pt 1):241-55. doi: 10.1113/jphysiol.2012.240168. Epub 2012 Oct 22.

PMID:
23090952
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Neuronal Elav-like (Hu) proteins regulate RNA splicing and abundance to control glutamate levels and neuronal excitability.

Ince-Dunn G, Okano HJ, Jensen KB, Park WY, Zhong R, Ule J, Mele A, Fak JJ, Yang C, Zhang C, Yoo J, Herre M, Okano H, Noebels JL, Darnell RB.

Neuron. 2012 Sep 20;75(6):1067-80. doi: 10.1016/j.neuron.2012.07.009.

PMID:
22998874
[PubMed - indexed for MEDLINE]
Free PMC Article

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