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Results: 1 to 20 of 52

1.

Crosslinking-immunoprecipitation (iCLIP) analysis reveals global regulatory roles of hnRNP L.

Rossbach O, Hung LH, Khrameeva E, Schreiner S, König J, Curk T, Zupan B, Ule J, Gelfand MS, Bindereif A.

RNA Biol. 2014 Feb;11(2):146-55. doi: 10.4161/rna.27991. Epub 2014 Feb 7.

PMID:
24526010
[PubMed - in process]
Free PMC Article
2.

'Oming in on RNA-protein interactions.

Rinn JL, Ule J.

Genome Biol. 2014 Jan 31;15(1):401. [Epub ahead of print] No abstract available.

PMID:
24485348
[PubMed - as supplied by publisher]
Free PMC Article
3.

RNAmotifs: prediction of multivalent RNA motifs that control alternative splicing.

Cereda M, Pozzoli U, Rot G, Juvan P, Schweitzer A, Clark T, Ule J.

Genome Biol. 2014 Jan 31;15(1):R20. [Epub ahead of print]

PMID:
24485098
[PubMed - as supplied by publisher]
Free PMC Article
4.

Hexanucleotide repeats in ALS/FTD form length-dependent RNA foci, sequester RNA binding proteins, and are neurotoxic.

Lee YB, Chen HJ, Peres JN, Gomez-Deza J, Attig J, Stalekar M, Troakes C, Nishimura AL, Scotter EL, Vance C, Adachi Y, Sardone V, Miller JW, Smith BN, Gallo JM, Ule J, Hirth F, Rogelj B, Houart C, Shaw CE.

Cell Rep. 2013 Dec 12;5(5):1178-86. doi: 10.1016/j.celrep.2013.10.049. Epub 2013 Nov 27.

PMID:
24290757
[PubMed - in process]
Free PMC Article
5.

Alu elements: at the crossroads between disease and evolution.

Ule J.

Biochem Soc Trans. 2013 Dec;41(6):1532-5. doi: 10.1042/BST20130157.

PMID:
24256249
[PubMed - in process]
Free PMC Article
6.

Molecular basis of UG-rich RNA recognition by the human splicing factor TDP-43.

Lukavsky PJ, Daujotyte D, Tollervey JR, Ule J, Stuani C, Buratti E, Baralle FE, Damberger FF, Allain FH.

Nat Struct Mol Biol. 2013 Dec;20(12):1443-9. doi: 10.1038/nsmb.2698. Epub 2013 Nov 17.

PMID:
24240615
[PubMed - indexed for MEDLINE]
7.

What, where, and when: the importance of post-transcriptional regulation in the brain.

Kiebler MA, Scheiffele P, Ule J.

Front Neurosci. 2013 Oct 29;7:192. doi: 10.3389/fnins.2013.00192. eCollection 2013. No abstract available.

PMID:
24194693
[PubMed]
Free PMC Article
8.

iCLIP: protein-RNA interactions at nucleotide resolution.

Huppertz I, Attig J, D'Ambrogio A, Easton LE, Sibley CR, Sugimoto Y, Tajnik M, König J, Ule J.

Methods. 2014 Feb;65(3):274-87. doi: 10.1016/j.ymeth.2013.10.011. Epub 2013 Oct 25.

PMID:
24184352
[PubMed - in process]
Free PMC Article
9.

NSun2-mediated cytosine-5 methylation of vault noncoding RNA determines its processing into regulatory small RNAs.

Hussain S, Sajini AA, Blanco S, Dietmann S, Lombard P, Sugimoto Y, Paramor M, Gleeson JG, Odom DT, Ule J, Frye M.

Cell Rep. 2013 Jul 25;4(2):255-61. doi: 10.1016/j.celrep.2013.06.029. Epub 2013 Jul 18.

PMID:
23871666
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Sixty years of genome biology.

Doolittle WF, Fraser P, Gerstein MB, Graveley BR, Henikoff S, Huttenhower C, Oshlack A, Ponting CP, Rinn JL, Schatz MC, Ule J, Weigel D, Weinstock GM.

Genome Biol. 2013 Apr 25;14(4):113. [Epub ahead of print]

PMID:
23651518
[PubMed - as supplied by publisher]
Free PMC Article
11.

Requirement of heterogeneous nuclear ribonucleoprotein C for BRCA gene expression and homologous recombination.

Anantha RW, Alcivar AL, Ma J, Cai H, Simhadri S, Ule J, König J, Xia B.

PLoS One. 2013 Apr 9;8(4):e61368. doi: 10.1371/journal.pone.0061368. Print 2013.

PMID:
23585894
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

CLIPing the brain: studies of protein-RNA interactions important for neurodegenerative disorders.

Modic M, Ule J, Sibley CR.

Mol Cell Neurosci. 2013 Sep;56:429-35. doi: 10.1016/j.mcn.2013.04.002. Epub 2013 Apr 10. Review.

PMID:
23583633
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Direct competition between hnRNP C and U2AF65 protects the transcriptome from the exonization of Alu elements.

Zarnack K, König J, Tajnik M, Martincorena I, Eustermann S, Stévant I, Reyes A, Anders S, Luscombe NM, Ule J.

Cell. 2013 Jan 31;152(3):453-66. doi: 10.1016/j.cell.2012.12.023.

PMID:
23374342
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

CELF4 regulates translation and local abundance of a vast set of mRNAs, including genes associated with regulation of synaptic function.

Wagnon JL, Briese M, Sun W, Mahaffey CL, Curk T, Rot G, Ule J, Frankel WN.

PLoS Genet. 2012;8(11):e1003067. doi: 10.1371/journal.pgen.1003067. Epub 2012 Nov 29.

PMID:
23209433
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Perturbation of chromatin structure globally affects localization and recruitment of splicing factors.

Schor IE, Llères D, Risso GJ, Pawellek A, Ule J, Lamond AI, Kornblihtt AR.

PLoS One. 2012;7(11):e48084. doi: 10.1371/journal.pone.0048084. Epub 2012 Nov 12.

PMID:
23152763
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Aberrant sodium channel activity in the complex seizure disorder of Celf4 mutant mice.

Sun W, Wagnon JL, Mahaffey CL, Briese M, Ule J, Frankel WN.

J Physiol. 2013 Jan 1;591(Pt 1):241-55. doi: 10.1113/jphysiol.2012.240168. Epub 2012 Oct 22.

PMID:
23090952
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Neuronal Elav-like (Hu) proteins regulate RNA splicing and abundance to control glutamate levels and neuronal excitability.

Ince-Dunn G, Okano HJ, Jensen KB, Park WY, Zhong R, Ule J, Mele A, Fak JJ, Yang C, Zhang C, Yoo J, Herre M, Okano H, Noebels JL, Darnell RB.

Neuron. 2012 Sep 20;75(6):1067-80. doi: 10.1016/j.neuron.2012.07.009.

PMID:
22998874
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Widespread binding of FUS along nascent RNA regulates alternative splicing in the brain.

Rogelj B, Easton LE, Bogu GK, Stanton LW, Rot G, Curk T, Zupan B, Sugimoto Y, Modic M, Haberman N, Tollervey J, Fujii R, Takumi T, Shaw CE, Ule J.

Sci Rep. 2012;2:603. doi: 10.1038/srep00603. Epub 2012 Aug 28.

PMID:
22934129
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions.

Sugimoto Y, König J, Hussain S, Zupan B, Curk T, Frye M, Ule J.

Genome Biol. 2012 Aug 3;13(8):R67. [Epub ahead of print]

PMID:
22863408
[PubMed - as supplied by publisher]
Free PMC Article
20.

The greatest catch: big game fishing for mRNA-bound proteins.

Sibley CR, Attig J, Ule J.

Genome Biol. 2012 Jul 17;13(7):163. [Epub ahead of print]

PMID:
22805650
[PubMed - as supplied by publisher]
Free PMC Article

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