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Results: 1 to 20 of 129

1.

Bistability, Oscillations, and Traveling Waves in Frog Egg Extracts.

Tyson JJ, Novak B.

Bull Math Biol. 2014 Sep 4. [Epub ahead of print]

PMID:
25185750
[PubMed - as supplied by publisher]
2.

Control of cell growth, division and death: information processing in living cells.

Tyson JJ, Novak B.

Interface Focus. 2014 Jun 6;4(3):20130070. doi: 10.1098/rsfs.2013.0070. Review.

PMID:
24904735
[PubMed]
3.

A stochastic model correctly predicts changes in budding yeast cell cycle dynamics upon periodic expression of CLN2.

Oguz C, Palmisano A, Laomettachit T, Watson LT, Baumann WT, Tyson JJ.

PLoS One. 2014 May 9;9(5):e96726. doi: 10.1371/journal.pone.0096726. eCollection 2014.

PMID:
24816736
[PubMed - in process]
Free PMC Article
4.

Mathematical models of the transitions between endocrine therapy responsive and resistant states in breast cancer.

Chen C, Baumann WT, Xing J, Xu L, Clarke R, Tyson JJ.

J R Soc Interface. 2014 May 7;11(96):20140206. doi: 10.1098/rsif.2014.0206. Print 2014 Jul 6.

PMID:
24806707
[PubMed - in process]
5.

Multistate Model Builder (MSMB): a flexible editor for compact biochemical models.

Palmisano A, Hoops S, Watson LT, Jones TC Jr, Tyson JJ, Shaffer CA.

BMC Syst Biol. 2014 Apr 4;8:42. doi: 10.1186/1752-0509-8-42.

PMID:
24708852
[PubMed - in process]
Free Article
6.

Modelling the effect of GRP78 on anti-oestrogen sensitivity and resistance in breast cancer.

Parmar JH, Cook KL, Shajahan-Haq AN, Clarke PA, Tavassoly I, Clarke R, Tyson JJ, Baumann WT.

Interface Focus. 2013 Aug 6;3(4):20130012. doi: 10.1098/rsfs.2013.0012.

PMID:
24511377
[PubMed]
Free PMC Article
7.

Role for regulated phosphatase activity in generating mitotic oscillations in Xenopus cell-free extracts.

Zhang T, Tyson JJ, Novák B.

Proc Natl Acad Sci U S A. 2013 Dec 17;110(51):20539-44. doi: 10.1073/pnas.1318065110. Epub 2013 Dec 2.

PMID:
24297885
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Potential role of a bistable histidine kinase switch in the asymmetric division cycle of Caulobacter crescentus.

Subramanian K, Paul MR, Tyson JJ.

PLoS Comput Biol. 2013;9(9):e1003221. doi: 10.1371/journal.pcbi.1003221. Epub 2013 Sep 12.

PMID:
24068904
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Measurement and modeling of transcriptional noise in the cell cycle regulatory network.

Ball DA, Adames NR, Reischmann N, Barik D, Franck CT, Tyson JJ, Peccoud J.

Cell Cycle. 2013 Oct 1;12(19):3203-18. doi: 10.4161/cc.26257. Epub 2013 Sep 4.

PMID:
24013422
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Modeling the estrogen receptor to growth factor receptor signaling switch in human breast cancer cells.

Chen C, Baumann WT, Clarke R, Tyson JJ.

FEBS Lett. 2013 Oct 11;587(20):3327-34. doi: 10.1016/j.febslet.2013.08.022. Epub 2013 Aug 28.

PMID:
23994522
[PubMed - indexed for MEDLINE]
11.

Optimization and model reduction in the high dimensional parameter space of a budding yeast cell cycle model.

Oguz C, Laomettachit T, Chen KC, Watson LT, Baumann WT, Tyson JJ.

BMC Syst Biol. 2013 Jun 28;7:53. doi: 10.1186/1752-0509-7-53.

PMID:
23809412
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Top-down network analysis to drive bottom-up modeling of physiological processes.

Poirel CL, Rodrigues RR, Chen KC, Tyson JJ, Murali TM.

J Comput Biol. 2013 May;20(5):409-18. doi: 10.1089/cmb.2012.0274.

PMID:
23641868
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Minimal models for cell-cycle control based on competitive inhibition and multisite phosphorylations of Cdk substrates.

Gérard C, Tyson JJ, Novák B.

Biophys J. 2013 Mar 19;104(6):1367-79. doi: 10.1016/j.bpj.2013.02.012. Epub 2013 Mar 19.

PMID:
23528096
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Molecular mechanisms creating bistable switches at cell cycle transitions.

Verdugo A, Vinod PK, Tyson JJ, Novak B.

Open Biol. 2013 Mar 13;3(3):120179. doi: 10.1098/rsob.120179.

PMID:
23486222
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

A simple theoretical framework for understanding heterogeneous differentiation of CD4+ T cells.

Hong T, Xing J, Li L, Tyson JJ.

BMC Syst Biol. 2012 Jun 14;6:66. doi: 10.1186/1752-0509-6-66.

PMID:
22697466
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Network topologies and dynamics leading to endotoxin tolerance and priming in innate immune cells.

Fu Y, Glaros T, Zhu M, Wang P, Wu Z, Tyson JJ, Li L, Xing J.

PLoS Comput Biol. 2012;8(5):e1002526. doi: 10.1371/journal.pcbi.1002526. Epub 2012 May 17.

PMID:
22615556
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Endoplasmic reticulum stress, the unfolded protein response, autophagy, and the integrated regulation of breast cancer cell fate.

Clarke R, Cook KL, Hu R, Facey CO, Tavassoly I, Schwartz JL, Baumann WT, Tyson JJ, Xuan J, Wang Y, Wärri A, Shajahan AN.

Cancer Res. 2012 Mar 15;72(6):1321-31. doi: 10.1158/0008-5472.CAN-11-3213. Review.

PMID:
22422988
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

A mathematical model of mitotic exit in budding yeast: the role of Polo kinase.

Hancioglu B, Tyson JJ.

PLoS One. 2012;7(2):e30810. doi: 10.1371/journal.pone.0030810. Epub 2012 Feb 23.

PMID:
22383977
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Hybrid modeling and simulation of stochastic effects on progression through the eukaryotic cell cycle.

Liu Z, Pu Y, Li F, Shaffer CA, Hoops S, Tyson JJ, Cao Y.

J Chem Phys. 2012 Jan 21;136(3):034105. doi: 10.1063/1.3677190.

PMID:
22280742
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Oscillatory dynamics of cell cycle proteins in single yeast cells analyzed by imaging cytometry.

Ball DA, Marchand J, Poulet M, Baumann WT, Chen KC, Tyson JJ, Peccoud J.

PLoS One. 2011;6(10):e26272. doi: 10.1371/journal.pone.0026272. Epub 2011 Oct 26.

PMID:
22046265
[PubMed - indexed for MEDLINE]
Free PMC Article

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