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Items: 1 to 20 of 140


A Model of Yeast Cell-Cycle Regulation Based on a Standard Component Modeling Strategy for Protein Regulatory Networks.

Laomettachit T, Chen KC, Baumann WT, Tyson JJ.

PLoS One. 2016 May 17;11(5):e0153738. doi: 10.1371/journal.pone.0153738. eCollection 2016.


The Epidemiology of Hip and Groin Injuries in Professional Baseball Players.

Coleman SH, Mayer SW, Tyson JJ, Pollack KM, Curriero FC.

Am J Orthop (Belle Mead NJ). 2016 Mar-Apr;45(3):168-75.


JigCell Run Manager (JC-RM): a tool for managing large sets of biochemical model parametrizations.

Palmisano A, Hoops S, Watson LT, Jones TC Jr, Tyson JJ, Shaffer CA.

BMC Syst Biol. 2015 Dec 24;9:95. doi: 10.1186/s12918-015-0237-0.


The Physarum polycephalum Genome Reveals Extensive Use of Prokaryotic Two-Component and Metazoan-Type Tyrosine Kinase Signaling.

Schaap P, Barrantes I, Minx P, Sasaki N, Anderson RW, Bénard M, Biggar KK, Buchler NE, Bundschuh R, Chen X, Fronick C, Fulton L, Golderer G, Jahn N, Knoop V, Landweber LF, Maric C, Miller D, Noegel AA, Peace R, Pierron G, Sasaki T, Schallenberg-Rüdinger M, Schleicher M, Singh R, Spaller T, Storey KB, Suzuki T, Tomlinson C, Tyson JJ, Warren WC, Werner ER, Werner-Felmayer G, Wilson RK, Winckler T, Gott JM, Glöckner G, Marwan W.

Genome Biol Evol. 2015 Nov 27;8(1):109-25. doi: 10.1093/gbe/evv237.


Endocrine resistance in breast cancer--An overview and update.

Clarke R, Tyson JJ, Dixon JM.

Mol Cell Endocrinol. 2015 Dec 15;418 Pt 3:220-34. doi: 10.1016/j.mce.2015.09.035. Epub 2015 Oct 9.


Experimental testing of a new integrated model of the budding yeast Start transition.

Adames NR, Schuck PL, Chen KC, Murali TM, Tyson JJ, Peccoud J.

Mol Biol Cell. 2015 Nov 5;26(22):3966-84. doi: 10.1091/mbc.E15-06-0358. Epub 2015 Aug 26.


Dynamic Modeling of the Interaction Between Autophagy and Apoptosis in Mammalian Cells.

Tavassoly I, Parmar J, Shajahan-Haq AN, Clarke R, Baumann WT, Tyson JJ.

CPT Pharmacometrics Syst Pharmacol. 2015 Apr;4(4):263-72. doi: 10.1002/psp4.29. Epub 2015 Apr 17.


Dynamical Localization of DivL and PleC in the Asymmetric Division Cycle of Caulobacter crescentus: A Theoretical Investigation of Alternative Models.

Subramanian K, Paul MR, Tyson JJ.

PLoS Comput Biol. 2015 Jul 17;11(7):e1004348. doi: 10.1371/journal.pcbi.1004348. eCollection 2015 Jul.


Models in biology: lessons from modeling regulation of the eukaryotic cell cycle.

Tyson JJ, Novák B.

BMC Biol. 2015 Jul 1;13:46. doi: 10.1186/s12915-015-0158-9. Review.


A Mathematical Framework for Understanding Four-Dimensional Heterogeneous Differentiation of CD4+ T Cells.

Hong T, Oguz C, Tyson JJ.

Bull Math Biol. 2015 Jun;77(6):1046-64. doi: 10.1007/s11538-015-0076-6. Epub 2015 Mar 17.


Cell cycle control by a minimal Cdk network.

Gérard C, Tyson JJ, Coudreuse D, Novák B.

PLoS Comput Biol. 2015 Feb 6;11(2):e1004056. doi: 10.1371/journal.pcbi.1004056. eCollection 2015 Feb.


Bistability, oscillations, and traveling waves in frog egg extracts.

Tyson JJ, Novak B.

Bull Math Biol. 2015 May;77(5):796-816. doi: 10.1007/s11538-014-0009-9. Epub 2014 Sep 4.


Control of cell growth, division and death: information processing in living cells.

Tyson JJ, Novak B.

Interface Focus. 2014 Jun 6;4(3):20130070. doi: 10.1098/rsfs.2013.0070. Review.


A stochastic model correctly predicts changes in budding yeast cell cycle dynamics upon periodic expression of CLN2.

Oguz C, Palmisano A, Laomettachit T, Watson LT, Baumann WT, Tyson JJ.

PLoS One. 2014 May 9;9(5):e96726. doi: 10.1371/journal.pone.0096726. eCollection 2014.


Mathematical models of the transitions between endocrine therapy responsive and resistant states in breast cancer.

Chen C, Baumann WT, Xing J, Xu L, Clarke R, Tyson JJ.

J R Soc Interface. 2014 May 7;11(96):20140206. doi: 10.1098/rsif.2014.0206. Print 2014 Jul 6.


Multistate Model Builder (MSMB): a flexible editor for compact biochemical models.

Palmisano A, Hoops S, Watson LT, Jones TC Jr, Tyson JJ, Shaffer CA.

BMC Syst Biol. 2014 Apr 4;8:42. doi: 10.1186/1752-0509-8-42.


Modelling the effect of GRP78 on anti-oestrogen sensitivity and resistance in breast cancer.

Parmar JH, Cook KL, Shajahan-Haq AN, Clarke PA, Tavassoly I, Clarke R, Tyson JJ, Baumann WT.

Interface Focus. 2013 Aug 6;3(4):20130012. doi: 10.1098/rsfs.2013.0012.


Role for regulated phosphatase activity in generating mitotic oscillations in Xenopus cell-free extracts.

Zhang T, Tyson JJ, Novák B.

Proc Natl Acad Sci U S A. 2013 Dec 17;110(51):20539-44. doi: 10.1073/pnas.1318065110. Epub 2013 Dec 2.


Potential role of a bistable histidine kinase switch in the asymmetric division cycle of Caulobacter crescentus.

Subramanian K, Paul MR, Tyson JJ.

PLoS Comput Biol. 2013;9(9):e1003221. doi: 10.1371/journal.pcbi.1003221. Epub 2013 Sep 12.


Measurement and modeling of transcriptional noise in the cell cycle regulatory network.

Ball DA, Adames NR, Reischmann N, Barik D, Franck CT, Tyson JJ, Peccoud J.

Cell Cycle. 2013 Oct 1;12(19):3203-18. doi: 10.4161/cc.26257. Epub 2013 Sep 4.

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