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Results: 15

1.

Protein models docking benchmark 2.

Anishchenko I, Kundrotas PJ, Tuzikov AV, Vakser IA.

Proteins. 2015 Feb 25. doi: 10.1002/prot.24784. [Epub ahead of print]

PMID:
25712716
[PubMed - as supplied by publisher]
2.

Structural templates for comparative protein docking.

Anishchenko I, Kundrotas PJ, Tuzikov AV, Vakser IA.

Proteins. 2014 Dec 9. doi: 10.1002/prot.24736. [Epub ahead of print]

PMID:
25488330
[PubMed - as supplied by publisher]
3.

In silico design of novel broad anti-HIV-1 agents based on glycosphingolipid β-galactosylceramide, a high-affinity receptor for the envelope gp120 V3 loop.

Andrianov AM, Kornoushenko YV, Kashyn IA, Kisel MA, Tuzikov AV.

J Biomol Struct Dyn. 2015 May;33(5):1051-66. doi: 10.1080/07391102.2014.926832. Epub 2014 Jun 19.

PMID:
24942968
[PubMed - in process]
4.

Discovery of novel anti-HIV-1 agents based on a broadly neutralizing antibody against the envelope gp120 V3 loop: a computational study.

Andrianov AM, Kashyn IA, Tuzikov AV.

J Biomol Struct Dyn. 2014 Dec;32(12):1993-2004. doi: 10.1080/07391102.2013.848825. Epub 2013 Nov 20.

PMID:
24251545
[PubMed - in process]
5.

Protein models: the Grand Challenge of protein docking.

Anishchenko I, Kundrotas PJ, Tuzikov AV, Vakser IA.

Proteins. 2014 Feb;82(2):278-87. doi: 10.1002/prot.24385. Epub 2013 Oct 17.

PMID:
23934791
[PubMed - indexed for MEDLINE]
6.

Ensemble-based characterization of unbound and bound states on protein energy landscape.

Ruvinsky AM, Kirys T, Tuzikov AV, Vakser IA.

Protein Sci. 2013 Jun;22(6):734-44. doi: 10.1002/pro.2256. Epub 2013 Apr 29.

PMID:
23526684
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Correlation analysis of the side-chains conformational distribution in bound and unbound proteins.

Kirys T, Ruvinsky AM, Tuzikov AV, Vakser IA.

BMC Bioinformatics. 2012 Sep 17;13:236. doi: 10.1186/1471-2105-13-236.

PMID:
22984947
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Structural analysis of the envelope gp120 V3 loop for some HIV-1 variants circulating in the countries of Eastern Europe.

Andrianov AM, Kornoushenko YV, Anishchenko IV, Eremin VF, Tuzikov AV.

J Biomol Struct Dyn. 2013;31(7):665-83. doi: 10.1080/07391102.2012.706455. Epub 2012 Aug 13.

PMID:
22888999
[PubMed - indexed for MEDLINE]
9.

Structure fluctuations and conformational changes in protein binding.

Ruvinsky AM, Kirys T, Tuzikov AV, Vakser IA.

J Bioinform Comput Biol. 2012 Apr;10(2):1241002. doi: 10.1142/S0219720012410028.

PMID:
22809338
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Rotamer libraries and probabilities of transition between rotamers for the side chains in protein-protein binding.

Kirys T, Ruvinsky AM, Tuzikov AV, Vakser IA.

Proteins. 2012 Aug;80(8):2089-98. doi: 10.1002/prot.24103. Epub 2012 Jun 12.

PMID:
22544766
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Discovery of novel promising targets for anti-AIDS drug developments by computer modeling: application to the HIV-1 gp120 V3 loop.

Andrianov AM, Anishchenko IV, Tuzikov AV.

J Chem Inf Model. 2011 Oct 24;51(10):2760-7. doi: 10.1021/ci200255t. Epub 2011 Sep 22.

PMID:
21888425
[PubMed - indexed for MEDLINE]
12.

[Computer-assisted diagnosis of nodular lesions in the lung].

Khoruzhik SA, Bogushevich EV, Sprindzhuk MV, Snezhko EV, Kovalev VA, Tuzikov AV.

Vopr Onkol. 2011;57(1):25-35. Review. Russian. No abstract available.

PMID:
21598704
[PubMed - indexed for MEDLINE]
13.

Side-chain conformational changes upon Protein-Protein Association.

Ruvinsky AM, Kirys T, Tuzikov AV, Vakser IA.

J Mol Biol. 2011 Apr 29;408(2):356-65. doi: 10.1016/j.jmb.2011.02.030. Epub 2011 Feb 25.

PMID:
21354429
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

[Tube for GUT-Co-400 apparatus for treatment of neoplasms of the esophagus].

TUZIKOV AV.

Vestn Rentgenol Radiol. 1958 Nov-Dec;33(6):62. Russian. No abstract available.

PMID:
13625567
[PubMed - indexed for MEDLINE]
15.

[Critical considerations on the problems associated with ultrasoft roentgen rays in radiotherapy].

TUZIKOV AV.

Vestn Rentgenol Radiol. 1954 Sep-Oct;5:23-8. Russian. No abstract available.

PMID:
13226649
[PubMed - indexed for MEDLINE]
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