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Items: 20

1.

Computational discovery of novel HIV-1 entry inhibitors based on potent and broad neutralizing antibody VRC01.

Andrianov AM, Kashyn IA, Tuzikov AV.

J Mol Graph Model. 2015 Sep;61:262-71. doi: 10.1016/j.jmgm.2015.08.003. Epub 2015 Aug 8.

PMID:
26298811
2.

Simulated unbound structures for benchmarking of protein docking in the DOCKGROUND resource.

Kirys T, Ruvinsky AM, Singla D, Tuzikov AV, Kundrotas PJ, Vakser IA.

BMC Bioinformatics. 2015 Jul 31;16:243. doi: 10.1186/s12859-015-0672-3.

3.

186 Molecular dynamics simulations of the structure of human antibody 10E8 Fab in complex with membrane-proximal external region of the HIV-1 GP41 protein.

Kashyn IA, Tuzikov AV, Andrianov AM.

J Biomol Struct Dyn. 2015;33 Suppl 1:123. doi: 10.1080/07391102.2015.1032823. No abstract available.

PMID:
26103396
4.

185 Virtual screening of novel anti-HIV-1 agents targeting CD4-binding site of the envelope gp120 protein.

Andrianov AM, Kashyn IA, Tuzikov AV.

J Biomol Struct Dyn. 2015;33 Suppl 1:122-3. doi: 10.1080/07391102.2015.1032822. No abstract available.

PMID:
26103395
5.

184 In silico discovery of novel HIV-1 entry inhibitors based on potent and broad neutralizing antibody VRC01.

Andrianov AM, Kashyn IA, Tuzikov AV.

J Biomol Struct Dyn. 2015;33 Suppl 1:121. doi: 10.1080/07391102.2015.1032821. No abstract available.

PMID:
26103394
6.

Protein models docking benchmark 2.

Anishchenko I, Kundrotas PJ, Tuzikov AV, Vakser IA.

Proteins. 2015 May;83(5):891-7. doi: 10.1002/prot.24784. Epub 2015 Mar 25.

7.

Structural templates for comparative protein docking.

Anishchenko I, Kundrotas PJ, Tuzikov AV, Vakser IA.

Proteins. 2015 Sep;83(9):1563-70. doi: 10.1002/prot.24736. Epub 2015 Jun 13.

PMID:
25488330
8.

In silico design of novel broad anti-HIV-1 agents based on glycosphingolipid β-galactosylceramide, a high-affinity receptor for the envelope gp120 V3 loop.

Andrianov AM, Kornoushenko YV, Kashyn IA, Kisel MA, Tuzikov AV.

J Biomol Struct Dyn. 2015;33(5):1051-66. doi: 10.1080/07391102.2014.926832. Epub 2014 Jun 19.

PMID:
24942968
9.

Discovery of novel anti-HIV-1 agents based on a broadly neutralizing antibody against the envelope gp120 V3 loop: a computational study.

Andrianov AM, Kashyn IA, Tuzikov AV.

J Biomol Struct Dyn. 2014 Dec;32(12):1993-2004. doi: 10.1080/07391102.2013.848825. Epub 2013 Nov 20.

PMID:
24251545
10.

Protein models: the Grand Challenge of protein docking.

Anishchenko I, Kundrotas PJ, Tuzikov AV, Vakser IA.

Proteins. 2014 Feb;82(2):278-87. doi: 10.1002/prot.24385. Epub 2013 Oct 17.

PMID:
23934791
11.

Ensemble-based characterization of unbound and bound states on protein energy landscape.

Ruvinsky AM, Kirys T, Tuzikov AV, Vakser IA.

Protein Sci. 2013 Jun;22(6):734-44. doi: 10.1002/pro.2256. Epub 2013 Apr 29.

12.

Correlation analysis of the side-chains conformational distribution in bound and unbound proteins.

Kirys T, Ruvinsky AM, Tuzikov AV, Vakser IA.

BMC Bioinformatics. 2012 Sep 17;13:236. doi: 10.1186/1471-2105-13-236.

13.

Structural analysis of the envelope gp120 V3 loop for some HIV-1 variants circulating in the countries of Eastern Europe.

Andrianov AM, Kornoushenko YV, Anishchenko IV, Eremin VF, Tuzikov AV.

J Biomol Struct Dyn. 2013;31(7):665-83. doi: 10.1080/07391102.2012.706455. Epub 2012 Aug 13.

PMID:
22888999
14.

Structure fluctuations and conformational changes in protein binding.

Ruvinsky AM, Kirys T, Tuzikov AV, Vakser IA.

J Bioinform Comput Biol. 2012 Apr;10(2):1241002. doi: 10.1142/S0219720012410028.

15.

Rotamer libraries and probabilities of transition between rotamers for the side chains in protein-protein binding.

Kirys T, Ruvinsky AM, Tuzikov AV, Vakser IA.

Proteins. 2012 Aug;80(8):2089-98. doi: 10.1002/prot.24103. Epub 2012 Jun 12.

16.

Discovery of novel promising targets for anti-AIDS drug developments by computer modeling: application to the HIV-1 gp120 V3 loop.

Andrianov AM, Anishchenko IV, Tuzikov AV.

J Chem Inf Model. 2011 Oct 24;51(10):2760-7. doi: 10.1021/ci200255t. Epub 2011 Sep 22.

PMID:
21888425
17.

[Computer-assisted diagnosis of nodular lesions in the lung].

Khoruzhik SA, Bogushevich EV, Sprindzhuk MV, Snezhko EV, Kovalev VA, Tuzikov AV.

Vopr Onkol. 2011;57(1):25-35. Review. Russian. No abstract available.

PMID:
21598704
18.

Side-chain conformational changes upon Protein-Protein Association.

Ruvinsky AM, Kirys T, Tuzikov AV, Vakser IA.

J Mol Biol. 2011 Apr 29;408(2):356-65. doi: 10.1016/j.jmb.2011.02.030. Epub 2011 Feb 25.

19.

[Tube for GUT-Co-400 apparatus for treatment of neoplasms of the esophagus].

TUZIKOV AV.

Vestn Rentgenol Radiol. 1958 Nov-Dec;33(6):62. Russian. No abstract available.

PMID:
13625567
20.

[Critical considerations on the problems associated with ultrasoft roentgen rays in radiotherapy].

TUZIKOV AV.

Vestn Rentgenol Radiol. 1954 Sep-Oct;5:23-8. Russian. No abstract available.

PMID:
13226649
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