Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 58

1.

Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013.

Pyysalo S, Ohta T, Rak R, Rowley A, Chun HW, Jung SJ, Choi SP, Tsujii J, Ananiadou S.

BMC Bioinformatics. 2015 Jul 13;16 Suppl 10:S2. doi: 10.1186/1471-2105-16-S10-S2. Epub 2015 Jul 13.

2.

Bilingual term alignment from comparable corpora in English discharge summary and Chinese discharge summary.

Xu Y, Chen L, Wei J, Ananiadou S, Fan Y, Qian Y, Chang EI, Tsujii J.

BMC Bioinformatics. 2015 May 9;16:149. doi: 10.1186/s12859-015-0606-0.

3.

Anatomical entity recognition with a hierarchical framework augmented by external resources.

Xu Y, Hua J, Ni Z, Chen Q, Fan Y, Ananiadou S, Chang EI, Tsujii J.

PLoS One. 2014 Oct 24;9(10):e108396. doi: 10.1371/journal.pone.0108396. eCollection 2014.

4.

Generalising semantic category disambiguation with large lexical resources for fun and profit.

Stenetorp P, Pyysalo S, Ananiadou S, Tsujii J.

J Biomed Semantics. 2014 Jun 2;5:26. doi: 10.1186/2041-1480-5-26. eCollection 2014.

5.

Joint segmentation and named entity recognition using dual decomposition in Chinese discharge summaries.

Xu Y, Wang Y, Liu T, Liu J, Fan Y, Qian Y, Tsujii J, Chang EI.

J Am Med Inform Assoc. 2014 Feb;21(e1):e84-92. doi: 10.1136/amiajnl-2013-001806. Epub 2013 Aug 9.

6.

Building large collections of Chinese and English medical terms from semi-structured and encyclopedia websites.

Xu Y, Wang Y, Sun JT, Zhang J, Tsujii J, Chang E.

PLoS One. 2013 Jul 9;8(7):e67526. doi: 10.1371/journal.pone.0067526. Print 2013.

7.

An end-to-end system to identify temporal relation in discharge summaries: 2012 i2b2 challenge.

Xu Y, Wang Y, Liu T, Tsujii J, Chang EI.

J Am Med Inform Assoc. 2013 Sep-Oct;20(5):849-58. doi: 10.1136/amiajnl-2012-001607. Epub 2013 Mar 6.

8.

Proximity-based frameworks for generating embeddings from multi-output data.

Mu T, Goulermas JY, Tsujii J, Ananiadou S.

IEEE Trans Pattern Anal Mach Intell. 2012 Nov;34(11):2216-32.

PMID:
23289130
9.

Improving protein coreference resolution by simple semantic classification.

Nguyen N, Kim JD, Miwa M, Matsuzaki T, Tsujii J.

BMC Bioinformatics. 2012 Nov 17;13:304. doi: 10.1186/1471-2105-13-304.

10.

Event extraction across multiple levels of biological organization.

Pyysalo S, Ohta T, Miwa M, Cho HC, Tsujii J, Ananiadou S.

Bioinformatics. 2012 Sep 15;28(18):i575-i581. doi: 10.1093/bioinformatics/bts407.

11.

Suicide note sentiment classification: a supervised approach augmented by web data.

Xu Y, Wang Y, Liu J, Tu Z, Sun JT, Tsujii J, Chang E.

Biomed Inform Insights. 2012;5(Suppl. 1):31-41. doi: 10.4137/BII.S8956. Epub 2012 Jan 30.

12.

Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011.

Pyysalo S, Ohta T, Rak R, Sullivan D, Mao C, Wang C, Sobral B, Tsujii J, Ananiadou S.

BMC Bioinformatics. 2012 Jun 26;13 Suppl 11:S2. doi: 10.1186/1471-2105-13-S11-S2.

13.

The Genia Event and Protein Coreference tasks of the BioNLP Shared Task 2011.

Kim JD, Nguyen N, Wang Y, Tsujii J, Takagi T, Yonezawa A.

BMC Bioinformatics. 2012 Jun 26;13 Suppl 11:S1. doi: 10.1186/1471-2105-13-S11-S1.

14.

Named entity recognition of follow-up and time information in 20,000 radiology reports.

Xu Y, Tsujii J, Chang EI.

J Am Med Inform Assoc. 2012 Sep-Oct;19(5):792-9. doi: 10.1136/amiajnl-2012-000812. Epub 2012 Jul 6.

15.

Feature engineering combined with machine learning and rule-based methods for structured information extraction from narrative clinical discharge summaries.

Xu Y, Hong K, Tsujii J, Chang EI.

J Am Med Inform Assoc. 2012 Sep-Oct;19(5):824-32. doi: 10.1136/amiajnl-2011-000776. Epub 2012 May 14.

16.

A classification approach to coreference in discharge summaries: 2011 i2b2 challenge.

Xu Y, Liu J, Wu J, Wang Y, Tu Z, Sun JT, Tsujii J, Chang EI.

J Am Med Inform Assoc. 2012 Sep-Oct;19(5):897-905. doi: 10.1136/amiajnl-2011-000734. Epub 2012 Apr 13.

17.

U-Compare bio-event meta-service: compatible BioNLP event extraction services.

Kano Y, Björne J, Ginter F, Salakoski T, Buyko E, Hahn U, Cohen KB, Verspoor K, Roeder C, Hunter LE, Kilicoglu H, Bergler S, Van Landeghem S, Van Parys T, Van de Peer Y, Miwa M, Ananiadou S, Neves M, Pascual-Montano A, Özgür A, Radev DR, Riedel S, Sætre R, Chun HW, Kim JD, Pyysalo S, Ohta T, Tsujii J.

BMC Bioinformatics. 2011 Dec 18;12:481. doi: 10.1186/1471-2105-12-481.

18.

Event extraction for DNA methylation.

Ohta T, Pyysalo S, Miwa M, Tsujii J.

J Biomed Semantics. 2011 Oct 6;2 Suppl 5:S2. doi: 10.1186/2041-1480-2-S5-S2.

19.

An analysis of gene/protein associations at PubMed scale.

Pyysalo S, Ohta T, Tsujii J.

J Biomed Semantics. 2011 Oct 6;2 Suppl 5:S5. doi: 10.1186/2041-1480-2-S5-S5.

20.

Automatic extraction of angiogenesis bioprocess from text.

Wang X, McKendrick I, Barrett I, Dix I, French T, Tsujii J, Ananiadou S.

Bioinformatics. 2011 Oct 1;27(19):2730-7. doi: 10.1093/bioinformatics/btr460. Epub 2011 Aug 5.

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Loading ...
Write to the Help Desk