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Items: 1 to 20 of 23


DeF-GPU: Efficient and effective deletions finding in hepatitis B viral genomic DNA using a GPU architecture.

Cheng CP, Lan KL, Liu WC, Chang TT, Tseng VS.

Methods. 2016 Jul 30. pii: S1046-2023(16)30231-6. doi: 10.1016/j.ymeth.2016.07.020. [Epub ahead of print]


Aligning to the sample-specific reference sequence to optimize the accuracy of next-generation sequencing analysis for hepatitis B virus.

Liu WC, Lin CP, Cheng CP, Ho CH, Lan KL, Cheng JH, Yen CJ, Cheng PN, Wu IC, Li IC, Chang BC, Tseng VS, Chiu YC, Chang TT.

Hepatol Int. 2016 Jan;10(1):147-57. doi: 10.1007/s12072-015-9645-x. Epub 2015 Jul 25.


Mining disease risk patterns from nationwide clinical databases for the assessment of early rheumatoid arthritis risk.

Chin CY, Weng MY, Lin TC, Cheng SY, Yang YH, Tseng VS.

PLoS One. 2015 Apr 13;10(4):e0122508. doi: 10.1371/journal.pone.0122508. eCollection 2015.


Global Oct4 target gene analysis reveals novel downstream PTEN and TNC genes required for drug-resistance and metastasis in lung cancer.

Tang YA, Chen CH, Sun HS, Cheng CP, Tseng VS, Hsu HS, Su WC, Lai WW, Wang YC.

Nucleic Acids Res. 2015 Feb 18;43(3):1593-608. doi: 10.1093/nar/gkv024. Epub 2015 Jan 21.


Network-based analysis identifies epigenetic biomarkers of esophageal squamous cell carcinoma progression.

Cheng CP, Kuo IY, Alakus H, Frazer KA, Harismendy O, Wang YC, Tseng VS.

Bioinformatics. 2014 Nov 1;30(21):3054-61. doi: 10.1093/bioinformatics/btu433. Epub 2014 Jul 10.


MiningABs: mining associated biomarkers across multi-connected gene expression datasets.

Cheng CP, DeBoever C, Frazer KA, Liu YC, Tseng VS.

BMC Bioinformatics. 2014 Jun 8;15:173. doi: 10.1186/1471-2105-15-173.


Effective peak alignment for mass spectrometry data analysis using two-phase clustering approach.

Liu YC, Chen LC, Liu CW, Tseng VS.

Int J Data Min Bioinform. 2014;9(1):52-66.


Design of a real-time and continua-based framework for care guideline recommendations.

Lin YF, Shie HH, Yang YC, Tseng VS.

Int J Environ Res Public Health. 2014 Apr 16;11(4):4262-79. doi: 10.3390/ijerph110404262.


Prediction of regulatory gene pairs using dynamic time warping and gene ontology.

Yang AC, Hsu HH, Lu MD, Tseng VS, Shih TK.

Int J Data Min Bioinform. 2014;10(2):121-45.


An efficient method for mining cross-timepoint gene regulation sequential patterns from time course gene expression datasets.

Cheng CP, Liu YC, Tsai YL, Tseng VS.

BMC Bioinformatics. 2013;14 Suppl 12:S3. doi: 10.1186/1471-2105-14-S12-S3. Epub 2013 Sep 24.


Mining differential top-k co-expression patterns from time course comparative gene expression datasets.

Liu YC, Cheng CP, Tseng VS.

BMC Bioinformatics. 2013 Jul 21;14:230. doi: 10.1186/1471-2105-14-230.


Analysis of precore/core covariances associated with viral kinetics and genotypes in hepatitis B e antigen-positive chronic hepatitis B patients.

Cheng CP, Lee PF, Liu WC, Wu IC, Chin CY, Chang TT, Tseng VS.

PLoS One. 2012;7(2):e32553. doi: 10.1371/journal.pone.0032553. Epub 2012 Feb 27.


Discovering relational-based association rules with multiple minimum supports on microarray datasets.

Liu YC, Cheng CP, Tseng VS.

Bioinformatics. 2011 Nov 15;27(22):3142-8. doi: 10.1093/bioinformatics/btr526. Epub 2011 Sep 16.


Transcriptional activation of the Axl and PDGFR-α by c-Met through a ras- and Src-independent mechanism in human bladder cancer.

Yeh CY, Shin SM, Yeh HH, Wu TJ, Shin JW, Chang TY, Raghavaraju G, Lee CT, Chiang JH, Tseng VS, Lee YC, Shen CH, Chow NH, Liu HS.

BMC Cancer. 2011 Apr 16;11:139. doi: 10.1186/1471-2407-11-139.


WF-MSB: a weighted fuzzy-based biclustering method for gene expression data.

Chen LC, Yu PS, Tseng VS.

Int J Data Min Bioinform. 2011;5(1):89-109.


Malignant pleural effusion cells show aberrant glucose metabolism gene expression.

Lin CC, Chen LC, Tseng VS, Yan JJ, Lai WW, Su WP, Lin CH, Huang CY, Su WC.

Eur Respir J. 2011 Jun;37(6):1453-65. doi: 10.1183/09031936.00015710. Epub 2010 Sep 30.


Identification of tyrosine-phosphorylated proteins associated with lung cancer metastasis using label-free quantitative analyses.

Wu HY, Tseng VS, Chen LC, Chang HY, Chuang IC, Tsay YG, Liao PC.

J Proteome Res. 2010 Aug 6;9(8):4102-12. doi: 10.1021/pr1006153.


A novel data mining mechanism considering bio-signal and environmental data with applications on asthma monitoring.

Lee CH, Chen JC, Tseng VS.

Comput Methods Programs Biomed. 2011 Jan;101(1):44-61. doi: 10.1016/j.cmpb.2010.04.016. Epub 2010 May 31.


A statistical procedure to selectively detect metabolite signals in LC-MS data based on using variable isotope ratios.

Lin LC, Wu HY, Tseng VS, Chen LC, Chang YC, Liao PC.

J Am Soc Mass Spectrom. 2010 Feb;21(2):232-41. doi: 10.1016/j.jasms.2009.10.002. Epub 2009 Oct 12.

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