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Items: 16

1.

A phylogenomic analysis of the role and timing of molecular adaptation in the aquatic transition of cetartiodactyl mammals.

Tsagkogeorga G, McGowen MR, Davies KT, Jarman S, Polanowski A, Bertelsen MF, Rossiter SJ.

R Soc Open Sci. 2015 Sep 30;2(9):150156. doi: 10.1098/rsos.150156. eCollection 2015 Sep.

2.

Family Wide Molecular Adaptations to Underground Life in African Mole-Rats Revealed by Phylogenomic Analysis.

Davies KT, Bennett NC, Tsagkogeorga G, Rossiter SJ, Faulkes CG.

Mol Biol Evol. 2015 Dec;32(12):3089-107. doi: 10.1093/molbev/msv175. Epub 2015 Aug 29.

3.

Divergent evolutionary rates in vertebrate and mammalian specific conserved non-coding elements (CNEs) in echolocating mammals.

Davies KT, Tsagkogeorga G, Rossiter SJ.

BMC Evol Biol. 2014 Dec 19;14:261. doi: 10.1186/s12862-014-0261-5.

4.

Comparative population genomics in animals uncovers the determinants of genetic diversity.

Romiguier J, Gayral P, Ballenghien M, Bernard A, Cahais V, Chenuil A, Chiari Y, Dernat R, Duret L, Faivre N, Loire E, Lourenco JM, Nabholz B, Roux C, Tsagkogeorga G, Weber AA, Weinert LA, Belkhir K, Bierne N, Glémin S, Galtier N.

Nature. 2014 Nov 13;515(7526):261-3. doi: 10.1038/nature13685. Epub 2014 Aug 20.

PMID:
25141177
5.

Molecular evolution of growth hormone and insulin-like growth factor 1 receptors in long-lived, small-bodied mammals.

Davies KT, Tsagkogeorga G, Bennett NC, Dávalos LM, Faulkes CG, Rossiter SJ.

Gene. 2014 Oct 10;549(2):228-36. doi: 10.1016/j.gene.2014.07.061. Epub 2014 Jul 24.

PMID:
25065922
6.

Phylogenomic analyses elucidate the evolutionary relationships of bats.

Tsagkogeorga G, Parker J, Stupka E, Cotton JA, Rossiter SJ.

Curr Biol. 2013 Nov 18;23(22):2262-7. doi: 10.1016/j.cub.2013.09.014. Epub 2013 Oct 31.

7.

Genome-wide signatures of convergent evolution in echolocating mammals.

Parker J, Tsagkogeorga G, Cotton JA, Liu Y, Provero P, Stupka E, Rossiter SJ.

Nature. 2013 Oct 10;502(7470):228-31. doi: 10.1038/nature12511. Epub 2013 Sep 4.

8.

Crossing the species barrier: genomic hotspots of introgression between two highly divergent Ciona intestinalis species.

Roux C, Tsagkogeorga G, Bierne N, Galtier N.

Mol Biol Evol. 2013 Jul;30(7):1574-87. doi: 10.1093/molbev/mst066. Epub 2013 Apr 5.

9.

The population genomics of a fast evolver: high levels of diversity, functional constraint, and molecular adaptation in the tunicate Ciona intestinalis.

Tsagkogeorga G, Cahais V, Galtier N.

Genome Biol Evol. 2012;4(8):740-9. doi: 10.1093/gbe/evs054. Epub 2012 Jun 28.

10.

Reference-free transcriptome assembly in non-model animals from next-generation sequencing data.

Cahais V, Gayral P, Tsagkogeorga G, Melo-Ferreira J, Ballenghien M, Weinert L, Chiari Y, Belkhir K, Ranwez V, Galtier N.

Mol Ecol Resour. 2012 Sep;12(5):834-45. doi: 10.1111/j.1755-0998.2012.03148.x. Epub 2012 Apr 30.

PMID:
22540679
11.

Next-generation sequencing of transcriptomes: a guide to RNA isolation in nonmodel animals.

Gayral P, Weinert L, Chiari Y, Tsagkogeorga G, Ballenghien M, Galtier N.

Mol Ecol Resour. 2011 Jul;11(4):650-61. doi: 10.1111/j.1755-0998.2011.03010.x. Epub 2011 Apr 12.

PMID:
21481219
12.

Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate.

Denoeud F, Henriet S, Mungpakdee S, Aury JM, Da Silva C, Brinkmann H, Mikhaleva J, Olsen LC, Jubin C, Cañestro C, Bouquet JM, Danks G, Poulain J, Campsteijn C, Adamski M, Cross I, Yadetie F, Muffato M, Louis A, Butcher S, Tsagkogeorga G, Konrad A, Singh S, Jensen MF, Huynh Cong E, Eikeseth-Otteraa H, Noel B, Anthouard V, Porcel BM, Kachouri-Lafond R, Nishino A, Ugolini M, Chourrout P, Nishida H, Aasland R, Huzurbazar S, Westhof E, Delsuc F, Lehrach H, Reinhardt R, Weissenbach J, Roy SW, Artiguenave F, Postlethwait JH, Manak JR, Thompson EM, Jaillon O, Du Pasquier L, Boudinot P, Liberles DA, Volff JN, Philippe H, Lenhard B, Roest Crollius H, Wincker P, Chourrout D.

Science. 2010 Dec 3;330(6009):1381-5. doi: 10.1126/science.1194167. Epub 2010 Nov 18.

13.

Accelerated evolutionary rate of housekeeping genes in tunicates.

Tsagkogeorga G, Turon X, Galtier N, Douzery EJ, Delsuc F.

J Mol Evol. 2010 Aug;71(2):153-67. doi: 10.1007/s00239-010-9372-9. Epub 2010 Aug 10.

PMID:
20697701
14.

Tunicate mitogenomics and phylogenetics: peculiarities of the Herdmania momus mitochondrial genome and support for the new chordate phylogeny.

Singh TR, Tsagkogeorga G, Delsuc F, Blanquart S, Shenkar N, Loya Y, Douzery EJ, Huchon D.

BMC Genomics. 2009 Nov 17;10:534. doi: 10.1186/1471-2164-10-534.

15.

An updated 18S rRNA phylogeny of tunicates based on mixture and secondary structure models.

Tsagkogeorga G, Turon X, Hopcroft RR, Tilak MK, Feldstein T, Shenkar N, Loya Y, Huchon D, Douzery EJ, Delsuc F.

BMC Evol Biol. 2009 Aug 5;9:187. doi: 10.1186/1471-2148-9-187.

16.

Additional molecular support for the new chordate phylogeny.

Delsuc F, Tsagkogeorga G, Lartillot N, Philippe H.

Genesis. 2008 Nov;46(11):592-604. doi: 10.1002/dvg.20450.

PMID:
19003928
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