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Results: 1 to 20 of 27

1.

Fast and Cost-Effective Genetic Mapping in Apple Using Next-Generation Sequencing.

Gardner KM, Brown PJ, Cooke TF, Cann S, Costa F, Bustamante CD, Velasco R, Troggio M, Myles S.

G3 (Bethesda). 2014 Jul 16. pii: g3.114.011023. doi: 10.1534/g3.114.011023. [Epub ahead of print]

PMID:
25031181
[PubMed - as supplied by publisher]
Free Article
2.

The draft genome sequence of European pear (Pyrus communis L. 'Bartlett').

Chagné D, Crowhurst RN, Pindo M, Thrimawithana A, Deng C, Ireland H, Fiers M, Dzierzon H, Cestaro A, Fontana P, Bianco L, Lu A, Storey R, Knäbel M, Saeed M, Montanari S, Kim YK, Nicolini D, Larger S, Stefani E, Allan AC, Bowen J, Harvey I, Johnston J, Malnoy M, Troggio M, Perchepied L, Sawyer G, Wiedow C, Won K, Viola R, Hellens RP, Brewer L, Bus VG, Schaffer RJ, Gardiner SE, Velasco R.

PLoS One. 2014 Apr 3;9(4):e92644. doi: 10.1371/journal.pone.0092644. eCollection 2014.

PMID:
24699266
[PubMed - in process]
Free PMC Article
3.

Identification of Pyrus single nucleotide polymorphisms (SNPs) and evaluation for genetic mapping in European pear and interspecific Pyrus hybrids.

Montanari S, Saeed M, Knäbel M, Kim Y, Troggio M, Malnoy M, Velasco R, Fontana P, Won K, Durel CE, Perchepied L, Schaffer R, Wiedow C, Bus V, Brewer L, Gardiner SE, Crowhurst RN, Chagné D.

PLoS One. 2013 Oct 14;8(10):e77022. doi: 10.1371/journal.pone.0077022. eCollection 2013.

PMID:
24155917
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin.

Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fernández FF, Costa F, Velasco R, Cestaro A, Sargent DJ.

PLoS One. 2013 Jun 27;8(6):e67407. Print 2013.

PMID:
23826289
[PubMed - as supplied by publisher]
Free PMC Article
5.

Genetic diversity and population structure assessed by SSR and SNP markers in a large germplasm collection of grape.

Emanuelli F, Lorenzi S, Grzeskowiak L, Catalano V, Stefanini M, Troggio M, Myles S, Martinez-Zapater JM, Zyprian E, Moreira FM, Grando MS.

BMC Plant Biol. 2013 Mar 7;13:39. doi: 10.1186/1471-2229-13-39.

PMID:
23497049
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

A multi-population consensus genetic map reveals inconsistent marker order among maps likely attributed to structural variations in the apple genome.

Khan MA, Han Y, Zhao YF, Troggio M, Korban SS.

PLoS One. 2012;7(11):e47864. doi: 10.1371/journal.pone.0047864. Epub 2012 Nov 5.

PMID:
23144832
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array.

Antanaviciute L, Fernández-Fernández F, Jansen J, Banchi E, Evans KM, Viola R, Velasco R, Dunwell JM, Troggio M, Sargent DJ.

BMC Genomics. 2012 May 25;13:203. doi: 10.1186/1471-2164-13-203.

PMID:
22631220
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Development and evaluation of a 9K SNP array for peach by internationally coordinated SNP detection and validation in breeding germplasm.

Verde I, Bassil N, Scalabrin S, Gilmore B, Lawley CT, Gasic K, Micheletti D, Rosyara UR, Cattonaro F, Vendramin E, Main D, Aramini V, Blas AL, Mockler TC, Bryant DW, Wilhelm L, Troggio M, Sosinski B, Aranzana MJ, Arús P, Iezzoni A, Morgante M, Peace C.

PLoS One. 2012;7(4):e35668. doi: 10.1371/journal.pone.0035668. Epub 2012 Apr 20. Erratum in: PLoS One. 2012;7(6). doi:10.1371/annotation/33f1ba92-c304-4757-91aa-555de64a0768.

PMID:
22536421
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Whole genome comparisons of Fragaria, Prunus and Malus reveal different modes of evolution between Rosaceous subfamilies.

Jung S, Cestaro A, Troggio M, Main D, Zheng P, Cho I, Folta KM, Sosinski B, Abbott A, Celton JM, Arús P, Shulaev V, Verde I, Morgante M, Rokhsar D, Velasco R, Sargent DJ.

BMC Genomics. 2012 Apr 4;13:129. doi: 10.1186/1471-2164-13-129.

PMID:
22475018
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Genome-wide SNP detection, validation, and development of an 8K SNP array for apple.

Chagné D, Crowhurst RN, Troggio M, Davey MW, Gilmore B, Lawley C, Vanderzande S, Hellens RP, Kumar S, Cestaro A, Velasco R, Main D, Rees JD, Iezzoni A, Mockler T, Wilhelm L, Van de Weg E, Gardiner SE, Bassil N, Peace C.

PLoS One. 2012;7(2):e31745. doi: 10.1371/journal.pone.0031745. Epub 2012 Feb 21.

PMID:
22363718
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

QTL and candidate gene mapping for polyphenolic composition in apple fruit.

Chagné D, Krieger C, Rassam M, Sullivan M, Fraser J, André C, Pindo M, Troggio M, Gardiner SE, Henry RA, Allan AC, McGhie TK, Laing WA.

BMC Plant Biol. 2012 Jan 23;12:12. doi: 10.1186/1471-2229-12-12.

PMID:
22269060
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

High temperature reduces apple fruit colour via modulation of the anthocyanin regulatory complex.

Lin-Wang K, Micheletti D, Palmer J, Volz R, Lozano L, Espley R, Hellens RP, Chagnè D, Rowan DD, Troggio M, Iglesias I, Allan AC.

Plant Cell Environ. 2011 Jul;34(7):1176-90. doi: 10.1111/j.1365-3040.2011.02316.x. Epub 2011 Apr 21.

PMID:
21410713
[PubMed - indexed for MEDLINE]
13.

Comparative analysis of rosaceous genomes and the reconstruction of a putative ancestral genome for the family.

Illa E, Sargent DJ, Lopez Girona E, Bushakra J, Cestaro A, Crowhurst R, Pindo M, Cabrera A, van der Knaap E, Iezzoni A, Gardiner S, Velasco R, Arús P, Chagné D, Troggio M.

BMC Evol Biol. 2011 Jan 12;11:9. doi: 10.1186/1471-2148-11-9.

PMID:
21226921
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

The genome of woodland strawberry (Fragaria vesca).

Shulaev V, Sargent DJ, Crowhurst RN, Mockler TC, Folkerts O, Delcher AL, Jaiswal P, Mockaitis K, Liston A, Mane SP, Burns P, Davis TM, Slovin JP, Bassil N, Hellens RP, Evans C, Harkins T, Kodira C, Desany B, Crasta OR, Jensen RV, Allan AC, Michael TP, Setubal JC, Celton JM, Rees DJ, Williams KP, Holt SH, Ruiz Rojas JJ, Chatterjee M, Liu B, Silva H, Meisel L, Adato A, Filichkin SA, Troggio M, Viola R, Ashman TL, Wang H, Dharmawardhana P, Elser J, Raja R, Priest HD, Bryant DW Jr, Fox SE, Givan SA, Wilhelm LJ, Naithani S, Christoffels A, Salama DY, Carter J, Lopez Girona E, Zdepski A, Wang W, Kerstetter RA, Schwab W, Korban SS, Davik J, Monfort A, Denoyes-Rothan B, Arus P, Mittler R, Flinn B, Aharoni A, Bennetzen JL, Salzberg SL, Dickerman AW, Velasco R, Borodovsky M, Veilleux RE, Folta KM.

Nat Genet. 2011 Feb;43(2):109-16. doi: 10.1038/ng.740. Epub 2010 Dec 26.

PMID:
21186353
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

The genome of the domesticated apple (Malus × domestica Borkh.).

Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R.

Nat Genet. 2010 Oct;42(10):833-9. doi: 10.1038/ng.654. Epub 2010 Aug 29.

PMID:
20802477
[PubMed - indexed for MEDLINE]
16.

Physical mapping in highly heterozygous genomes: a physical contig map of the Pinot Noir grapevine cultivar.

Scalabrin S, Troggio M, Moroldo M, Pindo M, Felice N, Coppola G, Prete G, Malacarne G, Marconi R, Faes G, Jurman I, Grando S, Jesse T, Segala C, Valle G, Policriti A, Fontana P, Morgante M, Velasco R.

BMC Genomics. 2010 Mar 26;11:204. doi: 10.1186/1471-2164-11-204.

PMID:
20346114
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

A SNP transferability survey within the genus Vitis.

Vezzulli S, Micheletti D, Riaz S, Pindo M, Viola R, This P, Walker MA, Troggio M, Velasco R.

BMC Plant Biol. 2008 Dec 16;8:128. doi: 10.1186/1471-2229-8-128.

PMID:
19087337
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Sequencing and assembly of highly heterozygous genome of Vitis vinifera L. cv Pinot Noir: problems and solutions.

Zharkikh A, Troggio M, Pruss D, Cestaro A, Eldrdge G, Pindo M, Mitchell JT, Vezzulli S, Bhatnagar S, Fontana P, Viola R, Gutin A, Salamini F, Skolnick M, Velasco R.

J Biotechnol. 2008 Aug 31;136(1-2):38-43. doi: 10.1016/j.jbiotec.2008.04.013. Epub 2008 May 3.

PMID:
18538432
[PubMed - indexed for MEDLINE]
19.

A reference integrated map for cultivated grapevine (Vitis vinifera L.) from three crosses, based on 283 SSR and 501 SNP-based markers.

Vezzulli S, Troggio M, Coppola G, Jermakow A, Cartwright D, Zharkikh A, Stefanini M, Grando MS, Viola R, Adam-Blondon AF, Thomas M, This P, Velasco R.

Theor Appl Genet. 2008 Aug;117(4):499-511. doi: 10.1007/s00122-008-0794-3. Epub 2008 May 27.

PMID:
18504538
[PubMed - indexed for MEDLINE]
20.

A grapevine (Vitis vinifera L.) genetic map integrating the position of 139 expressed genes.

Salmaso M, Malacarne G, Troggio M, Faes G, Stefanini M, Grando MS, Velasco R.

Theor Appl Genet. 2008 May;116(8):1129-43. doi: 10.1007/s00122-008-0741-3.

PMID:
18347774
[PubMed - indexed for MEDLINE]

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