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Items: 1 to 20 of 56

1.

Delineation of metabolic gene clusters in plant genomes by chromatin signatures.

Yu N, Nützmann HW, MacDonald JT, Moore B, Field B, Berriri S, Trick M, Rosser SJ, Kumar SV, Freemont PS, Osbourn A.

Nucleic Acids Res. 2016 Mar 18;44(5):2255-65. doi: 10.1093/nar/gkw100. Epub 2016 Feb 18.

2.

Molecular markers for tolerance of European ash (Fraxinus excelsior) to dieback disease identified using Associative Transcriptomics.

Harper AL, McKinney LV, Nielsen LR, Havlickova L, Li Y, Trick M, Fraser F, Wang L, Fellgett A, Sollars ES, Janacek SH, Downie JA, Buggs RJ, Kjær ED, Bancroft I.

Sci Rep. 2016 Jan 13;6:19335. doi: 10.1038/srep19335.

3.

Genome distribution of differential homoeologue contributions to leaf gene expression in bread wheat.

Harper AL, Trick M, He Z, Clissold L, Fellgett A, Griffiths S, Bancroft I.

Plant Biotechnol J. 2016 May;14(5):1207-14. doi: 10.1111/pbi.12486. Epub 2015 Oct 7.

4.

The transcriptome of Euglena gracilis reveals unexpected metabolic capabilities for carbohydrate and natural product biochemistry.

O'Neill EC, Trick M, Hill L, Rejzek M, Dusi RG, Hamilton CJ, Zimba PV, Henrissat B, Field RA.

Mol Biosyst. 2015 Oct;11(10):2808-20. doi: 10.1039/c5mb00319a.

PMID:
26289754
5.

Collinearity analysis of Brassica A and C genomes based on an updated inferred unigene order.

Bancroft I, Fraser F, Morgan C, Trick M.

Data Brief. 2015 Feb 10;3:51-5. doi: 10.1016/j.dib.2015.01.004. eCollection 2015 Jun.

6.

The root hair "infectome" of Medicago truncatula uncovers changes in cell cycle genes and reveals a requirement for Auxin signaling in rhizobial infection.

Breakspear A, Liu C, Roy S, Stacey N, Rogers C, Trick M, Morieri G, Mysore KS, Wen J, Oldroyd GE, Downie JA, Murray JD.

Plant Cell. 2014 Dec;26(12):4680-701. doi: 10.1105/tpc.114.133496. Epub 2014 Dec 19.

7.

A novel and fast approach for population structure inference using kernel-PCA and optimization.

Popescu AA, Harper AL, Trick M, Bancroft I, Huber KT.

Genetics. 2014 Dec;198(4):1421-31. doi: 10.1534/genetics.114.171314. Epub 2014 Oct 16.

8.

Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state.

Crevillén P, Yang H, Cui X, Greeff C, Trick M, Qiu Q, Cao X, Dean C.

Nature. 2014 Nov 27;515(7528):587-90. doi: 10.1038/nature13722. Epub 2014 Sep 14.

9.

Dissection of the control of anion homeostasis by associative transcriptomics in Brassica napus.

Koprivova A, Harper AL, Trick M, Bancroft I, Kopriva S.

Plant Physiol. 2014 Sep;166(1):442-50. doi: 10.1104/pp.114.239947. Epub 2014 Jul 21.

10.

Associative transcriptomics study dissects the genetic architecture of seed glucosinolate content in Brassica napus.

Lu G, Harper AL, Trick M, Morgan C, Fraser F, O'Neill C, Bancroft I.

DNA Res. 2014 Dec;21(6):613-25. doi: 10.1093/dnares/dsu024. Epub 2014 Jul 15.

11.

Genome-wide association study dissects the genetic architecture of seed weight and seed quality in rapeseed (Brassica napus L.).

Li F, Chen B, Xu K, Wu J, Song W, Bancroft I, Harper AL, Trick M, Liu S, Gao G, Wang N, Yan G, Qiao J, Li J, Li H, Xiao X, Zhang T, Wu X.

DNA Res. 2014 Aug;21(4):355-67. doi: 10.1093/dnares/dsu002. Epub 2014 Feb 7.

12.

The control of seed oil polyunsaturate content in the polyploid crop species Brassica napus.

Wells R, Trick M, Soumpourou E, Clissold L, Morgan C, Werner P, Gibbard C, Clarke M, Jennaway R, Bancroft I.

Mol Breed. 2014;33:349-362. Epub 2013 Sep 21.

13.

Methods to study PAMP-triggered immunity in Brassica species.

Lloyd SR, Schoonbeek HJ, Trick M, Zipfel C, Ridout CJ.

Mol Plant Microbe Interact. 2014 Mar;27(3):286-95. doi: 10.1094/MPMI-05-13-0154-FI.

14.

Sequencing-based variant detection in the polyploid crop oilseed rape.

Wells R, Trick M, Fraser F, Soumpourou E, Clissold L, Morgan C, Pauquet J, Bancroft I.

BMC Plant Biol. 2013 Aug 6;13:111. doi: 10.1186/1471-2229-13-111.

15.

Analysis of the bread wheat genome using whole-genome shotgun sequencing.

Brenchley R, Spannagl M, Pfeifer M, Barker GL, D'Amore R, Allen AM, McKenzie N, Kramer M, Kerhornou A, Bolser D, Kay S, Waite D, Trick M, Bancroft I, Gu Y, Huo N, Luo MC, Sehgal S, Gill B, Kianian S, Anderson O, Kersey P, Dvorak J, McCombie WR, Hall A, Mayer KF, Edwards KJ, Bevan MW, Hall N.

Nature. 2012 Nov 29;491(7426):705-10. doi: 10.1038/nature11650.

16.

Associative transcriptomics of traits in the polyploid crop species Brassica napus.

Harper AL, Trick M, Higgins J, Fraser F, Clissold L, Wells R, Hattori C, Werner P, Bancroft I.

Nat Biotechnol. 2012 Aug;30(8):798-802. No abstract available.

PMID:
22820317
17.

Use of mRNA-seq to discriminate contributions to the transcriptome from the constituent genomes of the polyploid crop species Brassica napus.

Higgins J, Magusin A, Trick M, Fraser F, Bancroft I.

BMC Genomics. 2012 Jun 15;13:247. doi: 10.1186/1471-2164-13-247.

18.

Combining SNP discovery from next-generation sequencing data with bulked segregant analysis (BSA) to fine-map genes in polyploid wheat.

Trick M, Adamski NM, Mugford SG, Jiang CC, Febrer M, Uauy C.

BMC Plant Biol. 2012 Jan 26;12:14. doi: 10.1186/1471-2229-12-14.

19.

The genome of the mesopolyploid crop species Brassica rapa.

Wang X, Wang H, Wang J, Sun R, Wu J, Liu S, Bai Y, Mun JH, Bancroft I, Cheng F, Huang S, Li X, Hua W, Wang J, Wang X, Freeling M, Pires JC, Paterson AH, Chalhoub B, Wang B, Hayward A, Sharpe AG, Park BS, Weisshaar B, Liu B, Li B, Liu B, Tong C, Song C, Duran C, Peng C, Geng C, Koh C, Lin C, Edwards D, Mu D, Shen D, Soumpourou E, Li F, Fraser F, Conant G, Lassalle G, King GJ, Bonnema G, Tang H, Wang H, Belcram H, Zhou H, Hirakawa H, Abe H, Guo H, Wang H, Jin H, Parkin IA, Batley J, Kim JS, Just J, Li J, Xu J, Deng J, Kim JA, Li J, Yu J, Meng J, Wang J, Min J, Poulain J, Wang J, Hatakeyama K, Wu K, Wang L, Fang L, Trick M, Links MG, Zhao M, Jin M, Ramchiary N, Drou N, Berkman PJ, Cai Q, Huang Q, Li R, Tabata S, Cheng S, Zhang S, Zhang S, Huang S, Sato S, Sun S, Kwon SJ, Choi SR, Lee TH, Fan W, Zhao X, Tan X, Xu X, Wang Y, Qiu Y, Yin Y, Li Y, Du Y, Liao Y, Lim Y, Narusaka Y, Wang Y, Wang Z, Li Z, Wang Z, Xiong Z, Zhang Z; Brassica rapa Genome Sequencing Project Consortium.

Nat Genet. 2011 Aug 28;43(10):1035-9. doi: 10.1038/ng.919.

PMID:
21873998
20.

Dissecting the genome of the polyploid crop oilseed rape by transcriptome sequencing.

Bancroft I, Morgan C, Fraser F, Higgins J, Wells R, Clissold L, Baker D, Long Y, Meng J, Wang X, Liu S, Trick M.

Nat Biotechnol. 2011 Jul 31;29(8):762-6. doi: 10.1038/nbt.1926.

PMID:
21804563
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