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Results: 1 to 20 of 108

1.

Rigorous and thorough bioinformatic analyses of olfactory receptor promoters confirm enrichment of O/E and homeodomain binding sites but reveal no new common motifs.

Young JM, Luche RM, Trask BJ.

BMC Genomics. 2011 Nov 15;12:561. doi: 10.1186/1471-2164-12-561.

PMID:
22085861
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Comparative genomic hybridization to detect variation in the copy number of large DNA segments.

Holcomb IN, Trask BJ.

Cold Spring Harb Protoc. 2011 Nov 1;2011(11):1323-33. doi: 10.1101/pdb.top066589.

PMID:
22046040
[PubMed - indexed for MEDLINE]
3.

Chimpanzee and human Y chromosomes are remarkably divergent in structure and gene content.

Hughes JF, Skaletsky H, Pyntikova T, Graves TA, van Daalen SK, Minx PJ, Fulton RS, McGrath SD, Locke DP, Friedman C, Trask BJ, Mardis ER, Warren WC, Repping S, Rozen S, Wilson RK, Page DC.

Nature. 2010 Jan 28;463(7280):536-9. doi: 10.1038/nature08700. Epub 2010 Jan 13.

PMID:
20072128
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Extreme variability among mammalian V1R gene families.

Young JM, Massa HF, Hsu L, Trask BJ.

Genome Res. 2010 Jan;20(1):10-8. doi: 10.1101/gr.098913.109. Epub 2009 Dec 1.

PMID:
19952141
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Comparative analyses of chromosome alterations in soft-tissue metastases within and across patients with castration-resistant prostate cancer.

Holcomb IN, Young JM, Coleman IM, Salari K, Grove DI, Hsu L, True LD, Roudier MP, Morrissey CM, Higano CS, Nelson PS, Vessella RL, Trask BJ.

Cancer Res. 2009 Oct 1;69(19):7793-802. doi: 10.1158/0008-5472.CAN-08-3810. Epub 2009 Sep 22.

PMID:
19773449
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Tissue-specific variation in DNA methylation levels along human chromosome 1.

De Bustos C, Ramos E, Young JM, Tran RK, Menzel U, Langford CF, Eichler EE, Hsu L, Henikoff S, Dumanski JP, Trask BJ.

Epigenetics Chromatin. 2009 Jun 8;2(1):7. doi: 10.1186/1756-8935-2-7.

PMID:
19505295
[PubMed]
Free PMC Article
7.

Comparative sequence analysis of primate subtelomeres originating from a chromosome fission event.

Rudd MK, Endicott RM, Friedman C, Walker M, Young JM, Osoegawa K; NISC Comparative Sequencing Program, de Jong PJ, Green ED, Trask BJ.

Genome Res. 2009 Jan;19(1):33-41. doi: 10.1101/gr.083170.108. Epub 2008 Oct 24.

PMID:
18952852
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Extensive copy-number variation of the human olfactory receptor gene family.

Young JM, Endicott RM, Parghi SS, Walker M, Kidd JM, Trask BJ.

Am J Hum Genet. 2008 Aug;83(2):228-42. doi: 10.1016/j.ajhg.2008.07.005.

PMID:
18674749
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Genomic alterations indicate tumor origin and varied metastatic potential of disseminated cells from prostate cancer patients.

Holcomb IN, Grove DI, Kinnunen M, Friedman CL, Gallaher IS, Morgan TM, Sather CL, Delrow JJ, Nelson PS, Lange PH, Ellis WJ, True LD, Young JM, Hsu L, Trask BJ, Vessella RL.

Cancer Res. 2008 Jul 15;68(14):5599-608. doi: 10.1158/0008-5472.CAN-08-0812.

PMID:
18632612
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

A sequence-based survey of the complex structural organization of tumor genomes.

Raphael BJ, Volik S, Yu P, Wu C, Huang G, Linardopoulou EV, Trask BJ, Waldman F, Costello J, Pienta KJ, Mills GB, Bajsarowicz K, Kobayashi Y, Sridharan S, Paris PL, Tao Q, Aerni SJ, Brown RP, Bashir A, Gray JW, Cheng JF, de Jong P, Nefedov M, Ried T, Padilla-Nash HM, Collins CC.

Genome Biol. 2008;9(3):R59. doi: 10.1186/gb-2008-9-3-r59. Epub 2008 Mar 25.

PMID:
18364049
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Human subtelomeric WASH genes encode a new subclass of the WASP family.

Linardopoulou EV, Parghi SS, Friedman C, Osborn GE, Parkhurst SM, Trask BJ.

PLoS Genet. 2007 Dec;3(12):e237.

PMID:
18159949
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

V2R gene families degenerated in primates, dog and cow, but expanded in opossum.

Young JM, Trask BJ.

Trends Genet. 2007 May;23(5):212-5. Epub 2007 Mar 26.

PMID:
17382427
[PubMed - indexed for MEDLINE]
13.

Elevated rates of sister chromatid exchange at chromosome ends.

Rudd MK, Friedman C, Parghi SS, Linardopoulou EV, Hsu L, Trask BJ.

PLoS Genet. 2007 Feb 23;3(2):e32.

PMID:
17319749
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Human subtelomeres are hot spots of interchromosomal recombination and segmental duplication.

Linardopoulou EV, Williams EM, Fan Y, Friedman C, Young JM, Trask BJ.

Nature. 2005 Sep 1;437(7055):94-100.

PMID:
16136133
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Interchromosomal segmental duplications explain the unusual structure of PRSS3, the gene for an inhibitor-resistant trypsinogen.

Rowen L, Williams E, Glusman G, Linardopoulou E, Friedman C, Ahearn ME, Seto J, Boysen C, Qin S, Wang K, Kaur A, Bloom S, Hood L, Trask BJ.

Mol Biol Evol. 2005 Aug;22(8):1712-20. Epub 2005 May 18.

PMID:
15901841
[PubMed - indexed for MEDLINE]
Free Article
16.

Divergent V1R repertoires in five species: Amplification in rodents, decimation in primates, and a surprisingly small repertoire in dogs.

Young JM, Kambere M, Trask BJ, Lane RP.

Genome Res. 2005 Feb;15(2):231-40. Epub 2005 Jan 14. Erratum in: Genome Res. 2005 Apr;15(4):601.

PMID:
15653832
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Array comparative genomic hybridization analysis of genomic alterations in breast cancer subtypes.

Loo LW, Grove DI, Williams EM, Neal CL, Cousens LA, Schubert EL, Holcomb IN, Massa HF, Glogovac J, Li CI, Malone KE, Daling JR, Delrow JJ, Trask BJ, Hsu L, Porter PL.

Cancer Res. 2004 Dec 1;64(23):8541-9.

PMID:
15574760
[PubMed - indexed for MEDLINE]
Free Article
18.

Species specificity in rodent pheromone receptor repertoires.

Lane RP, Young J, Newman T, Trask BJ.

Genome Res. 2004 Apr;14(4):603-8.

PMID:
15060001
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Genome sequence of the Brown Norway rat yields insights into mammalian evolution.

Gibbs RA, Weinstock GM, Metzker ML, Muzny DM, Sodergren EJ, Scherer S, Scott G, Steffen D, Worley KC, Burch PE, Okwuonu G, Hines S, Lewis L, DeRamo C, Delgado O, Dugan-Rocha S, Miner G, Morgan M, Hawes A, Gill R, Celera, Holt RA, Adams MD, Amanatides PG, Baden-Tillson H, Barnstead M, Chin S, Evans CA, Ferriera S, Fosler C, Glodek A, Gu Z, Jennings D, Kraft CL, Nguyen T, Pfannkoch CM, Sitter C, Sutton GG, Venter JC, Woodage T, Smith D, Lee HM, Gustafson E, Cahill P, Kana A, Doucette-Stamm L, Weinstock K, Fechtel K, Weiss RB, Dunn DM, Green ED, Blakesley RW, Bouffard GG, De Jong PJ, Osoegawa K, Zhu B, Marra M, Schein J, Bosdet I, Fjell C, Jones S, Krzywinski M, Mathewson C, Siddiqui A, Wye N, McPherson J, Zhao S, Fraser CM, Shetty J, Shatsman S, Geer K, Chen Y, Abramzon S, Nierman WC, Havlak PH, Chen R, Durbin KJ, Egan A, Ren Y, Song XZ, Li B, Liu Y, Qin X, Cawley S, Worley KC, Cooney AJ, D'Souza LM, Martin K, Wu JQ, Gonzalez-Garay ML, Jackson AR, Kalafus KJ, McLeod MP, Milosavljevic A, Virk D, Volkov A, Wheeler DA, Zhang Z, Bailey JA, Eichler EE, Tuzun E, Birney E, Mongin E, Ureta-Vidal A, Woodwark C, Zdobnov E, Bork P, Suyama M, Torrents D, Alexandersson M, Trask BJ, Young JM, Huang H, Wang H, Xing H, Daniels S, Gietzen D, Schmidt J, Stevens K, Vitt U, Wingrove J, Camara F, Mar Albà M, Abril JF, Guigo R, Smit A, Dubchak I, Rubin EM, Couronne O, Poliakov A, Hübner N, Ganten D, Goesele C, Hummel O, Kreitler T, Lee YA, Monti J, Schulz H, Zimdahl H, Himmelbauer H, Lehrach H, Jacob HJ, Bromberg S, Gullings-Handley J, Jensen-Seaman MI, Kwitek AE, Lazar J, Pasko D, Tonellato PJ, Twigger S, Ponting CP, Duarte JM, Rice S, Goodstadt L, Beatson SA, Emes RD, Winter EE, Webber C, Brandt P, Nyakatura G, Adetobi M, Chiaromonte F, Elnitski L, Eswara P, Hardison RC, Hou M, Kolbe D, Makova K, Miller W, Nekrutenko A, Riemer C, Schwartz S, Taylor J, Yang S, Zhang Y, Lindpaintner K, Andrews TD, Caccamo M, Clamp M, Clarke L, Curwen V, Durbin R, Eyras E, Searle SM, Cooper GM, Batzoglou S, Brudno M, Sidow A, Stone EA, Venter JC, Payseur BA, Bourque G, López-Otín C, Puente XS, Chakrabarti K, Chatterji S, Dewey C, Pachter L, Bray N, Yap VB, Caspi A, Tesler G, Pevzner PA, Haussler D, Roskin KM, Baertsch R, Clawson H, Furey TS, Hinrichs AS, Karolchik D, Kent WJ, Rosenbloom KR, Trumbower H, Weirauch M, Cooper DN, Stenson PD, Ma B, Brent M, Arumugam M, Shteynberg D, Copley RR, Taylor MS, Riethman H, Mudunuri U, Peterson J, Guyer M, Felsenfeld A, Old S, Mockrin S, Collins F; Rat Genome Sequencing Project Consortium.

Nature. 2004 Apr 1;428(6982):493-521.

PMID:
15057822
[PubMed - indexed for MEDLINE]
20.

Odorant receptor expressed sequence tags demonstrate olfactory expression of over 400 genes, extensive alternate splicing and unequal expression levels.

Young JM, Shykind BM, Lane RP, Tonnes-Priddy L, Ross JA, Walker M, Williams EM, Trask BJ.

Genome Biol. 2003;4(11):R71. Epub 2003 Oct 7.

PMID:
14611657
[PubMed - indexed for MEDLINE]
Free PMC Article

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