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Results: 8

1.

Model reduction by manifold boundaries.

Transtrum MK, Qiu P.

Phys Rev Lett. 2014 Aug 29;113(9):098701. Epub 2014 Aug 29.

PMID:
25216014
[PubMed - in process]
2.

Parameter space compression underlies emergent theories and predictive models.

Machta BB, Chachra R, Transtrum MK, Sethna JP.

Science. 2013 Nov 1;342(6158):604-7. doi: 10.1126/science.1238723. Erratum in: Science. 2013 Nov 22;342(6161):931.

PMID:
24179222
[PubMed]
Free Article
3.

Use of the LQ model with large fraction sizes results in underestimation of isoeffect doses.

Sheu T, Molkentine J, Transtrum MK, Buchholz TA, Withers HR, Thames HD, Mason KA.

Radiother Oncol. 2013 Oct;109(1):21-5. doi: 10.1016/j.radonc.2013.08.027. Epub 2013 Sep 20.

PMID:
24060173
[PubMed - indexed for MEDLINE]
4.

Structural susceptibility and separation of time scales in the van der Pol oscillator.

Chachra R, Transtrum MK, Sethna JP.

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Aug;86(2 Pt 2):026712. Epub 2012 Aug 31.

PMID:
23005887
[PubMed - indexed for MEDLINE]
5.

Optimal experiment selection for parameter estimation in biological differential equation models.

Transtrum MK, Qiu P.

BMC Bioinformatics. 2012 Jul 27;13:181. doi: 10.1186/1471-2105-13-181.

PMID:
22838836
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Geometry of nonlinear least squares with applications to sloppy models and optimization.

Transtrum MK, Machta BB, Sethna JP.

Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Mar;83(3 Pt 2):036701. Epub 2011 Mar 3.

PMID:
21517619
[PubMed - indexed for MEDLINE]
7.

Comment on "Sloppy models, parameter uncertainty, and the role of experimental design".

Chachra R, Transtrum MK, Sethna JP.

Mol Biosyst. 2011 Aug;7(8):2522; author reply 2523-4. doi: 10.1039/c1mb05046j. Epub 2011 Apr 19.

PMID:
21503370
[PubMed - indexed for MEDLINE]
8.

Why are nonlinear fits to data so challenging?

Transtrum MK, Machta BB, Sethna JP.

Phys Rev Lett. 2010 Feb 12;104(6):060201. Epub 2010 Feb 10.

PMID:
20366807
[PubMed]
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