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Results: 1 to 20 of 106

1.

3DSpectra: A 3-Dimensional Quantification Algorithm For LC-MS Labeled Profile Data.

Nasso S, Hartler J, Trajanoski Z, Di Camillo B, Mechtler K, Toffolo GM.

J Proteomics. 2014 Sep 10. pii: S1874-3919(14)00416-3. doi: 10.1016/j.jprot.2014.08.017. [Epub ahead of print]

PMID:
25218586
[PubMed - as supplied by publisher]
2.

Somatically mutated tumor antigens in the quest for a more efficacious patient-oriented immunotherapy of cancer.

Trajanoski Z, Maccalli C, Mennonna D, Casorati G, Parmiani G, Dellabona P.

Cancer Immunol Immunother. 2014 Aug 28. [Epub ahead of print]

PMID:
25164877
[PubMed - as supplied by publisher]
3.

SPARQLGraph: a web-based platform for graphically querying biological Semantic Web databases.

Schweiger D, Trajanoski Z, Pabinger S.

BMC Bioinformatics. 2014 Aug 15;15(1):279. doi: 10.1186/1471-2105-15-279.

PMID:
25127889
[PubMed - in process]
Free PMC Article
4.

Molecular aspects of adipo-epithelial transdifferentiation in mouse mammary gland.

Prokesch A, Smorlesi A, Perugini J, Manieri M, Ciarmela P, Mondini E, Trajanoski Z, Kristiansen K, Giordano A, Bogner-Strauss JG, Cinti S.

Stem Cells. 2014 Jun 4. doi: 10.1002/stem.1756. [Epub ahead of print]

PMID:
24898182
[PubMed - as supplied by publisher]
5.

High STAT1 mRNA levels but not its tyrosine phosphorylation are associated with macrophage infiltration and bad prognosis in breast cancer.

Tymoszuk P, Charoentong P, Hackl H, Spilka R, Müller-Holzner E, Trajanoski Z, Obrist P, Revillion F, Peyrat JP, Fiegl H, Doppler W.

BMC Cancer. 2014 Apr 12;14:257. doi: 10.1186/1471-2407-14-257.

PMID:
24725474
[PubMed - in process]
Free PMC Article
6.

MEMOSys 2.0: an update of the bioinformatics database for genome-scale models and genomic data.

Pabinger S, Snajder R, Hardiman T, Willi M, Dander A, Trajanoski Z.

Database (Oxford). 2014 Feb 14;2014:bau004. doi: 10.1093/database/bau004. Print 2014.

PMID:
24532766
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

SeqBench: integrated solution for the management and analysis of exome sequencing data.

Dander A, Pabinger S, Sperk M, Fischer M, Stocker G, Trajanoski Z.

BMC Res Notes. 2014 Jan 20;7:43. doi: 10.1186/1756-0500-7-43.

PMID:
24444368
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Mathematical models for translational and clinical oncology.

Gallasch R, Efremova M, Charoentong P, Hackl H, Trajanoski Z.

J Clin Bioinforma. 2013 Nov 7;3(1):23. doi: 10.1186/2043-9113-3-23.

PMID:
24195863
[PubMed]
Free PMC Article
9.

microRNAs in nociceptive circuits as predictors of future clinical applications.

Kress M, Hüttenhofer A, Landry M, Kuner R, Favereaux A, Greenberg D, Bednarik J, Heppenstall P, Kronenberg F, Malcangio M, Rittner H, Uçeyler N, Trajanoski Z, Mouritzen P, Birklein F, Sommer C, Soreq H.

Front Mol Neurosci. 2013 Oct 17;6:33. doi: 10.3389/fnmol.2013.00033. Review.

PMID:
24151455
[PubMed]
Free PMC Article
10.

Spatiotemporal dynamics of intratumoral immune cells reveal the immune landscape in human cancer.

Bindea G, Mlecnik B, Tosolini M, Kirilovsky A, Waldner M, Obenauf AC, Angell H, Fredriksen T, Lafontaine L, Berger A, Bruneval P, Fridman WH, Becker C, Pagès F, Speicher MR, Trajanoski Z, Galon J.

Immunity. 2013 Oct 17;39(4):782-95. doi: 10.1016/j.immuni.2013.10.003.

PMID:
24138885
[PubMed - indexed for MEDLINE]
11.

Co-expressed genes prepositioned in spatial neighborhoods stochastically associate with SC35 speckles and RNA polymerase II factories.

Rieder D, Ploner C, Krogsdam AM, Stocker G, Fischer M, Scheideler M, Dani C, Amri EZ, Müller WG, McNally JG, Trajanoski Z.

Cell Mol Life Sci. 2014 May;71(9):1741-59. doi: 10.1007/s00018-013-1465-3. Epub 2013 Sep 12.

PMID:
24026398
[PubMed - indexed for MEDLINE]
12.

GPViz: dynamic visualization of genomic regions and variants affecting protein domains.

Snajder R, Trajanoski Z, Hackl H.

Bioinformatics. 2013 Sep 1;29(17):2195-6. doi: 10.1093/bioinformatics/btt354. Epub 2013 Jun 19.

PMID:
23782613
[PubMed - indexed for MEDLINE]
Free Article
13.

Identification of microRNA-mRNA functional interactions in UVB-induced senescence of human diploid fibroblasts.

Greussing R, Hackl M, Charoentong P, Pauck A, Monteforte R, Cavinato M, Hofer E, Scheideler M, Neuhaus M, Micutkova L, Mueck C, Trajanoski Z, Grillari J, Jansen-Dürr P.

BMC Genomics. 2013 Apr 4;14:224. doi: 10.1186/1471-2164-14-224.

PMID:
23557329
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Genome-scale model management and comparison.

Pabinger S, Trajanoski Z.

Methods Mol Biol. 2013;985:3-16. doi: 10.1007/978-1-62703-299-5_1.

PMID:
23417796
[PubMed - indexed for MEDLINE]
15.

A survey of tools for variant analysis of next-generation genome sequencing data.

Pabinger S, Dander A, Fischer M, Snajder R, Sperk M, Efremova M, Krabichler B, Speicher MR, Zschocke J, Trajanoski Z.

Brief Bioinform. 2014 Mar;15(2):256-78. doi: 10.1093/bib/bbs086. Epub 2013 Jan 21.

PMID:
23341494
[PubMed - in process]
Free PMC Article
16.

Nr4a1 is required for fasting-induced down-regulation of Pparγ2 in white adipose tissue.

Duszka K, Bogner-Strauss JG, Hackl H, Rieder D, Neuhold C, Prokesch A, Trajanoski Z, Krogsdam AM.

Mol Endocrinol. 2013 Jan;27(1):135-49. doi: 10.1210/me.2012-1248. Epub 2012 Dec 18.

PMID:
23250487
[PubMed - indexed for MEDLINE]
17.

Transcription factories.

Rieder D, Trajanoski Z, McNally JG.

Front Genet. 2012 Oct 23;3:221. doi: 10.3389/fgene.2012.00221. eCollection 2012.

PMID:
23109938
[PubMed]
Free PMC Article
18.

Cooperativity of stress-responsive transcription factors in core hypoxia-inducible factor binding regions.

Villar D, Ortiz-Barahona A, Gómez-Maldonado L, Pescador N, Sánchez-Cabo F, Hackl H, Rodriguez BA, Trajanoski Z, Dopazo A, Huang TH, Yan PS, Del Peso L.

PLoS One. 2012;7(9):e45708. doi: 10.1371/journal.pone.0045708. Epub 2012 Sep 24.

PMID:
23029193
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Bioinformatics for cancer immunology and immunotherapy.

Charoentong P, Angelova M, Efremova M, Gallasch R, Hackl H, Galon J, Trajanoski Z.

Cancer Immunol Immunother. 2012 Nov;61(11):1885-903. doi: 10.1007/s00262-012-1354-x. Epub 2012 Sep 18. Review.

PMID:
22986455
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

SIMPLEX: cloud-enabled pipeline for the comprehensive analysis of exome sequencing data.

Fischer M, Snajder R, Pabinger S, Dander A, Schossig A, Zschocke J, Trajanoski Z, Stocker G.

PLoS One. 2012;7(8):e41948. doi: 10.1371/journal.pone.0041948. Epub 2012 Aug 1.

PMID:
22870267
[PubMed - indexed for MEDLINE]
Free PMC Article

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