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Results: 1 to 20 of 110


The coordinated action of the MVB pathway and autophagy ensures cell survival during starvation.

Müller M, Schmidt O, Angelova M, Faserl K, Weys S, Kremser L, Pfaffenwimmer T, Dalik T, Kraft C, Trajanoski Z, Lindner H, Teis D.

Elife. 2015 Apr 22;4. doi: 10.7554/eLife.07736. [Epub ahead of print]


Characterization of the immunophenotypes and antigenomes of colorectal cancers reveals distinct tumor escape mechanisms and novel targets for immunotherapy.

Angelova M, Charoentong P, Hackl H, Fischer ML, Snajder R, Krogsdam AM, Waldner MJ, Bindea G, Mlecnik B, Galon J, Trajanoski Z.

Genome Biol. 2015 Mar 31;16(1):64. doi: 10.1186/s13059-015-0620-6.


Immediate T-Helper 17 Polarization Upon Triggering CD11b/c on HIV-Exposed Dendritic Cells.

Wilflingseder D, Schroll A, Hackl H, Gallasch R, Frampton D, Lass-Flörl C, Pancino G, Saez-Cirion A, Lambotte O, Weiss L, Kellam P, Trajanoski Z, Geijtenbeek T, Weiss G, Posch W.

J Infect Dis. 2015 Jan 12. pii: jiv014. [Epub ahead of print]


Personalized Oncology Suite: integrating next-generation sequencing data and whole-slide bioimages.

Dander A, Baldauf M, Sperk M, Pabinger S, Hiltpolt B, Trajanoski Z.

BMC Bioinformatics. 2014 Sep 18;15:306. doi: 10.1186/1471-2105-15-306.


3DSpectra: A 3-dimensional quantification algorithm for LC-MS labeled profile data.

Nasso S, Hartler J, Trajanoski Z, Di Camillo B, Mechtler K, Toffolo GM.

J Proteomics. 2015 Jan 1;112:156-65. doi: 10.1016/j.jprot.2014.08.017. Epub 2014 Sep 16.


Somatically mutated tumor antigens in the quest for a more efficacious patient-oriented immunotherapy of cancer.

Trajanoski Z, Maccalli C, Mennonna D, Casorati G, Parmiani G, Dellabona P.

Cancer Immunol Immunother. 2015 Jan;64(1):99-104. doi: 10.1007/s00262-014-1599-7. Epub 2014 Aug 28. Review.


SPARQLGraph: a web-based platform for graphically querying biological Semantic Web databases.

Schweiger D, Trajanoski Z, Pabinger S.

BMC Bioinformatics. 2014 Aug 15;15:279. doi: 10.1186/1471-2105-15-279.


Molecular aspects of adipoepithelial transdifferentiation in mouse mammary gland.

Prokesch A, Smorlesi A, Perugini J, Manieri M, Ciarmela P, Mondini E, Trajanoski Z, Kristiansen K, Giordano A, Bogner-Strauss JG, Cinti S.

Stem Cells. 2014 Oct;32(10):2756-66. doi: 10.1002/stem.1756.


High STAT1 mRNA levels but not its tyrosine phosphorylation are associated with macrophage infiltration and bad prognosis in breast cancer.

Tymoszuk P, Charoentong P, Hackl H, Spilka R, Müller-Holzner E, Trajanoski Z, Obrist P, Revillion F, Peyrat JP, Fiegl H, Doppler W.

BMC Cancer. 2014 Apr 12;14:257. doi: 10.1186/1471-2407-14-257.


MEMOSys 2.0: an update of the bioinformatics database for genome-scale models and genomic data.

Pabinger S, Snajder R, Hardiman T, Willi M, Dander A, Trajanoski Z.

Database (Oxford). 2014 Feb 14;2014:bau004. doi: 10.1093/database/bau004. Print 2014.


SeqBench: integrated solution for the management and analysis of exome sequencing data.

Dander A, Pabinger S, Sperk M, Fischer M, Stocker G, Trajanoski Z.

BMC Res Notes. 2014 Jan 20;7:43. doi: 10.1186/1756-0500-7-43.


Mathematical models for translational and clinical oncology.

Gallasch R, Efremova M, Charoentong P, Hackl H, Trajanoski Z.

J Clin Bioinforma. 2013 Nov 7;3(1):23. doi: 10.1186/2043-9113-3-23.


microRNAs in nociceptive circuits as predictors of future clinical applications.

Kress M, Hüttenhofer A, Landry M, Kuner R, Favereaux A, Greenberg D, Bednarik J, Heppenstall P, Kronenberg F, Malcangio M, Rittner H, Uçeyler N, Trajanoski Z, Mouritzen P, Birklein F, Sommer C, Soreq H.

Front Mol Neurosci. 2013 Oct 17;6:33. doi: 10.3389/fnmol.2013.00033. Review.


Spatiotemporal dynamics of intratumoral immune cells reveal the immune landscape in human cancer.

Bindea G, Mlecnik B, Tosolini M, Kirilovsky A, Waldner M, Obenauf AC, Angell H, Fredriksen T, Lafontaine L, Berger A, Bruneval P, Fridman WH, Becker C, Pagès F, Speicher MR, Trajanoski Z, Galon J.

Immunity. 2013 Oct 17;39(4):782-95. doi: 10.1016/j.immuni.2013.10.003.


Co-expressed genes prepositioned in spatial neighborhoods stochastically associate with SC35 speckles and RNA polymerase II factories.

Rieder D, Ploner C, Krogsdam AM, Stocker G, Fischer M, Scheideler M, Dani C, Amri EZ, Müller WG, McNally JG, Trajanoski Z.

Cell Mol Life Sci. 2014 May;71(9):1741-59. doi: 10.1007/s00018-013-1465-3. Epub 2013 Sep 12.


GPViz: dynamic visualization of genomic regions and variants affecting protein domains.

Snajder R, Trajanoski Z, Hackl H.

Bioinformatics. 2013 Sep 1;29(17):2195-6. doi: 10.1093/bioinformatics/btt354. Epub 2013 Jun 19.


Identification of microRNA-mRNA functional interactions in UVB-induced senescence of human diploid fibroblasts.

Greussing R, Hackl M, Charoentong P, Pauck A, Monteforte R, Cavinato M, Hofer E, Scheideler M, Neuhaus M, Micutkova L, Mueck C, Trajanoski Z, Grillari J, Jansen-Dürr P.

BMC Genomics. 2013 Apr 4;14:224. doi: 10.1186/1471-2164-14-224.


Genome-scale model management and comparison.

Pabinger S, Trajanoski Z.

Methods Mol Biol. 2013;985:3-16. doi: 10.1007/978-1-62703-299-5_1.


A survey of tools for variant analysis of next-generation genome sequencing data.

Pabinger S, Dander A, Fischer M, Snajder R, Sperk M, Efremova M, Krabichler B, Speicher MR, Zschocke J, Trajanoski Z.

Brief Bioinform. 2014 Mar;15(2):256-78. doi: 10.1093/bib/bbs086. Epub 2013 Jan 21.


Nr4a1 is required for fasting-induced down-regulation of Pparγ2 in white adipose tissue.

Duszka K, Bogner-Strauss JG, Hackl H, Rieder D, Neuhold C, Prokesch A, Trajanoski Z, Krogsdam AM.

Mol Endocrinol. 2013 Jan;27(1):135-49. doi: 10.1210/me.2012-1248. Epub 2012 Dec 18.

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