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Results: 1 to 20 of 57

1.

Cyclin D1 induction of Dicer governs microRNA processing and expression in breast cancer.

Yu Z, Wang L, Wang C, Ju X, Wang M, Chen K, Loro E, Li Z, Zhang Y, Wu K, Casimiro MC, Gormley M, Ertel A, Fortina P, Chen Y, Tozeren A, Liu Z, Pestell RG.

Nat Commun. 2013;4:2812. doi: 10.1038/ncomms3812.

PMID:
24287487
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Dachshund binds p53 to block the growth of lung adenocarcinoma cells.

Chen K, Wu K, Cai S, Zhang W, Zhou J, Wang J, Ertel A, Li Z, Rui H, Quong A, Lisanti MP, Tozeren A, Tanes C, Addya S, Gormley M, Wang C, McMahon SB, Pestell RG.

Cancer Res. 2013 Jun 1;73(11):3262-74. doi: 10.1158/0008-5472.CAN-12-3191. Epub 2013 Mar 14.

PMID:
23492369
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Bioinformatics analysis reveals transcriptome and microRNA signatures and drug repositioning targets for IBD and other autoimmune diseases.

Clark PM, Dawany N, Dampier W, Byers SW, Pestell RG, Tozeren A.

Inflamm Bowel Dis. 2012 Dec;18(12):2315-33. doi: 10.1002/ibd.22958. Epub 2012 Apr 5.

PMID:
22488912
[PubMed - indexed for MEDLINE]
4.

Identification of common biological pathways and drug targets across multiple respiratory viruses based on human host gene expression analysis.

Smith SB, Dampier W, Tozeren A, Brown JR, Magid-Slav M.

PLoS One. 2012;7(3):e33174. doi: 10.1371/journal.pone.0033174. Epub 2012 Mar 14.

PMID:
22432004
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

ChIP sequencing of cyclin D1 reveals a transcriptional role in chromosomal instability in mice.

Casimiro MC, Crosariol M, Loro E, Ertel A, Yu Z, Dampier W, Saria EA, Papanikolaou A, Stanek TJ, Li Z, Wang C, Fortina P, Addya S, Tozeren A, Knudsen ES, Arnold A, Pestell RG.

J Clin Invest. 2012 Mar 1;122(3):833-43. doi: 10.1172/JCI60256. Epub 2012 Feb 6. Erratum in: J Clin Invest. 2013 May 1;123(5):2332.

PMID:
22307325
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

HIV protein sequence hotspots for crosstalk with host hub proteins.

Sarmady M, Dampier W, Tozeren A.

PLoS One. 2011;6(8):e23293. doi: 10.1371/journal.pone.0023293. Epub 2011 Aug 15.

PMID:
21858059
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Sequence- and interactome-based prediction of viral protein hotspots targeting host proteins: a case study for HIV Nef.

Sarmady M, Dampier W, Tozeren A.

PLoS One. 2011;6(6):e20735. doi: 10.1371/journal.pone.0020735. Epub 2011 Jun 28.

PMID:
21738584
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Large-scale integration of microarray data reveals genes and pathways common to multiple cancer types.

Dawany NB, Dampier WN, Tozeren A.

Int J Cancer. 2011 Jun 15;128(12):2881-91. doi: 10.1002/ijc.25854. Epub 2011 Apr 11.

PMID:
21165954
[PubMed - indexed for MEDLINE]
9.

Domain altering SNPs in the human proteome and their impact on signaling pathways.

Liu Y, Tozeren A.

PLoS One. 2010 Sep 23;5(9):e12890. doi: 10.1371/journal.pone.0012890.

PMID:
20886114
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Asymmetric microarray data produces gene lists highly predictive of research literature on multiple cancer types.

Dawany NB, Tozeren A.

BMC Bioinformatics. 2010 Sep 27;11:483. doi: 10.1186/1471-2105-11-483.

PMID:
20875095
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Modular composition predicts kinase/substrate interactions.

Liu Y, Tozeren A.

BMC Bioinformatics. 2010 Jun 25;11:349. doi: 10.1186/1471-2105-11-349.

PMID:
20579376
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Attenuation of Forkhead signaling by the retinal determination factor DACH1.

Zhou J, Wang C, Wang Z, Dampier W, Wu K, Casimiro MC, Chepelev I, Popov VM, Quong A, Tozeren A, Zhao K, Lisanti MP, Pestell RG.

Proc Natl Acad Sci U S A. 2010 Apr 13;107(15):6864-9. doi: 10.1073/pnas.1002746107. Epub 2010 Mar 29.

PMID:
20351289
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Sequence alignment reveals possible MAPK docking motifs on HIV proteins.

Evans P, Sacan A, Ungar L, Tozeren A.

PLoS One. 2010 Jan 28;5(1):e8942. doi: 10.1371/journal.pone.0008942.

PMID:
20126615
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Host sequence motifs shared by HIV predict response to antiretroviral therapy.

Dampier W, Evans P, Ungar L, Tozeren A.

BMC Med Genomics. 2009 Jul 23;2:47. doi: 10.1186/1755-8794-2-47.

PMID:
19627600
[PubMed]
Free PMC Article
15.

Prediction of HIV-1 virus-host protein interactions using virus and host sequence motifs.

Evans P, Dampier W, Ungar L, Tozeren A.

BMC Med Genomics. 2009 May 18;2:27. doi: 10.1186/1755-8794-2-27.

PMID:
19450270
[PubMed]
Free PMC Article
16.

Human and mouse switch-like genes share common transcriptional regulatory mechanisms for bimodality.

Ertel A, Tozeren A.

BMC Genomics. 2008 Dec 23;9:628. doi: 10.1186/1471-2164-9-628.

PMID:
19105848
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Expression profiles of switch-like genes accurately classify tissue and infectious disease phenotypes in model-based classification.

Gormley M, Tozeren A.

BMC Bioinformatics. 2008 Nov 17;9:486. doi: 10.1186/1471-2105-9-486.

PMID:
19014681
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Switch-like genes populate cell communication pathways and are enriched for extracellular proteins.

Ertel A, Tozeren A.

BMC Genomics. 2008 Jan 4;9:3. doi: 10.1186/1471-2164-9-3.

PMID:
18177501
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Prediction potential of candidate biomarker sets identified and validated on gene expression data from multiple datasets.

Gormley M, Dampier W, Ertel A, Karacali B, Tozeren A.

BMC Bioinformatics. 2007 Oct 26;8:415.

PMID:
17963508
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Automated recognition of cell phenotypes in histology images based on membrane- and nuclei-targeting biomarkers.

Karaçali B, Vamvakidou AP, Tözeren A.

BMC Med Imaging. 2007 Sep 6;7:7.

PMID:
17822559
[PubMed - indexed for MEDLINE]
Free PMC Article

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