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Results: 1 to 20 of 96


Inferring the origin of metastases from cancer phylogenies.

Hong WS, Shpak M, Townsend JP.

Cancer Res. 2015 Aug 10. pii: canres.1889.2015. [Epub ahead of print]


Correction: Harnessing Case Isolation and Ring Vaccination to Control Ebola.

Wells C, Yamin D, Ndeffo-Mbah ML, Wenzel N, Gaffney SG, Townsend JP, Meyers LA, Fallah M, Nyenswah TG, Altice FL, Atkins KE, Galvani AP.

PLoS Negl Trop Dis. 2015 Jun 24;9(6):e0003888. doi: 10.1371/journal.pntd.0003888. eCollection 2015 Jun. No abstract available.


Solving the ecological puzzle of mycorrhizal associations using data from annotated collections and environmental samples - an example of saddle fungi.

Hwang J, Zhao Q, Yang ZL, Wang Z, Townsend JP.

Environ Microbiol Rep. 2015 Aug;7(4):658-67. doi: 10.1111/1758-2229.12303. Epub 2015 Jul 1.


Harnessing case isolation and ring vaccination to control Ebola.

Wells C, Yamin D, Ndeffo-Mbah ML, Wenzel N, Gaffney SG, Townsend JP, Meyers LA, Fallah M, Nyenswah TG, Altice FL, Atkins KE, Galvani AP.

PLoS Negl Trop Dis. 2015 May 29;9(5):e0003794. doi: 10.1371/journal.pntd.0003794. eCollection 2015 May.


Integrating Community-Based Interventions to Reverse the Convergent TB/HIV Epidemics in Rural South Africa.

Gilbert JA, Long EF, Brooks RP, Friedland GH, Moll AP, Townsend JP, Galvani AP, Shenoi SV.

PLoS One. 2015 May 4;10(5):e0126267. doi: 10.1371/journal.pone.0126267. eCollection 2015.


Gene Expression Evolves under a House-of-Cards Model of Stabilizing Selection.

Hodgins-Davis A, Rice DP, Townsend JP.

Mol Biol Evol. 2015 Aug;32(8):2130-40. doi: 10.1093/molbev/msv094. Epub 2015 Apr 20.


H-CLAP: hierarchical clustering within a linear array with an application in genetics.

Ghosh S, Townsend JP.

Stat Appl Genet Mol Biol. 2015 Apr;14(2):125-41. doi: 10.1515/sagmb-2013-0076.


Under-reporting and case fatality estimates for emerging epidemics.

Atkins KE, Wenzel NS, Ndeffo-Mbah M, Altice FL, Townsend JP, Galvani AP.

BMJ. 2015 Mar 16;350:h1115. doi: 10.1136/bmj.h1115. No abstract available.


Epidemiological and viral genomic sequence analysis of the 2014 ebola outbreak reveals clustered transmission.

Scarpino SV, Iamarino A, Wells C, Yamin D, Ndeffo-Mbah M, Wenzel NS, Fox SJ, Nyenswah T, Altice FL, Galvani AP, Meyers LA, Townsend JP.

Clin Infect Dis. 2015 Apr 1;60(7):1079-82. doi: 10.1093/cid/ciu1131. Epub 2014 Dec 15.


The peopling of the African continent and the diaspora into the new world.

Campbell MC, Hirbo JB, Townsend JP, Tishkoff SA.

Curr Opin Genet Dev. 2014 Dec;29:120-32. Review.


Strategies for containing Ebola in West Africa.

Pandey A, Atkins KE, Medlock J, Wenzel N, Townsend JP, Childs JE, Nyenswah TG, Ndeffo-Mbah ML, Galvani AP.

Science. 2014 Nov 21;346(6212):991-5. doi: 10.1126/science.1260612. Epub 2014 Oct 30.


Gene expression differences among three Neurospora species reveal genes required for sexual reproduction in Neurospora crassa.

Lehr NA, Wang Z, Li N, Hewitt DA, López-Giráldez F, Trail F, Townsend JP.

PLoS One. 2014 Oct 20;9(10):e110398. doi: 10.1371/journal.pone.0110398. eCollection 2014.


Phylogenetic informativeness reconciles ray-finned fish molecular divergence times.

Dornburg A, Townsend JP, Friedman M, Near TJ.

BMC Evol Biol. 2014 Aug 8;14:169. doi: 10.1186/s12862-014-0169-0.


Genome-wide characterization of light-regulated genes in Neurospora crassa.

Wu C, Yang F, Smith KM, Peterson M, Dekhang R, Zhang Y, Zucker J, Bredeweg EL, Mallappa C, Zhou X, Lyubetskaya A, Townsend JP, Galagan JE, Freitag M, Dunlap JC, Bell-Pedersen D, Sachs MS.

G3 (Bethesda). 2014 Jul 21;4(9):1731-45. doi: 10.1534/g3.114.012617.


Cellular superspreaders: an epidemiological perspective on HIV infection inside the body.

Talbert-Slagle K, Atkins KE, Yan KK, Khurana E, Gerstein M, Bradley EH, Berg D, Galvani AP, Townsend JP.

PLoS Pathog. 2014 May 8;10(5):e1004092. doi: 10.1371/journal.ppat.1004092. eCollection 2014 May. No abstract available.


Probabilistic uncertainty analysis of epidemiological modeling to guide public health intervention policy.

Gilbert JA, Meyers LA, Galvani AP, Townsend JP.

Epidemics. 2014 Mar;6:37-45. doi: 10.1016/j.epidem.2013.11.002. Epub 2013 Nov 19.


Detecting rare gene transfer events in bacterial populations.

Nielsen KM, Bøhn T, Townsend JP.

Front Microbiol. 2014 Jan 7;4:415. doi: 10.3389/fmicb.2013.00415. eCollection 2014 Jan 7. Review.


Global gene expression and focused knockout analysis reveals genes associated with fungal fruiting body development in Neurospora crassa.

Wang Z, Lopez-Giraldez F, Lehr N, Farré M, Common R, Trail F, Townsend JP.

Eukaryot Cell. 2014 Jan;13(1):154-69. doi: 10.1128/EC.00248-13. Epub 2013 Nov 15.


Potential cost-effectiveness of schistosomiasis treatment for reducing HIV transmission in Africa--the case of Zimbabwean women.

Ndeffo Mbah ML, Poolman EM, Atkins KE, Orenstein EW, Meyers LA, Townsend JP, Galvani AP.

PLoS Negl Trop Dis. 2013 Aug 1;7(8):e2346. doi: 10.1371/journal.pntd.0002346. Print 2013.

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