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Results: 1 to 20 of 89


H-CLAP: hierarchical clustering within a linear array with an application in genetics.

Ghosh S, Townsend JP.

Stat Appl Genet Mol Biol. 2015 Apr 1;14(2):125-41. doi: 10.1515/sagmb-2013-0076.


Under-reporting and case fatality estimates for emerging epidemics.

Atkins KE, Wenzel NS, Ndeffo-Mbah M, Altice FL, Townsend JP, Galvani AP.

BMJ. 2015 Mar 16;350:h1115. doi: 10.1136/bmj.h1115. No abstract available.


Epidemiological and viral genomic sequence analysis of the 2014 ebola outbreak reveals clustered transmission.

Scarpino SV, Iamarino A, Wells C, Yamin D, Ndeffo-Mbah M, Wenzel NS, Fox SJ, Nyenswah T, Altice FL, Galvani AP, Meyers LA, Townsend JP.

Clin Infect Dis. 2015 Apr 1;60(7):1079-82. doi: 10.1093/cid/ciu1131. Epub 2014 Dec 15.


The peopling of the African continent and the diaspora into the new world.

Campbell MC, Hirbo JB, Townsend JP, Tishkoff SA.

Curr Opin Genet Dev. 2014 Dec;29:120-32.


Strategies for containing Ebola in West Africa.

Pandey A, Atkins KE, Medlock J, Wenzel N, Townsend JP, Childs JE, Nyenswah TG, Ndeffo-Mbah ML, Galvani AP.

Science. 2014 Nov 21;346(6212):991-5. doi: 10.1126/science.1260612. Epub 2014 Oct 30.


Gene expression differences among three Neurospora species reveal genes required for sexual reproduction in Neurospora crassa.

Lehr NA, Wang Z, Li N, Hewitt DA, López-Giráldez F, Trail F, Townsend JP.

PLoS One. 2014 Oct 20;9(10):e110398. doi: 10.1371/journal.pone.0110398. eCollection 2014.


Phylogenetic informativeness reconciles ray-finned fish molecular divergence times.

Dornburg A, Townsend JP, Friedman M, Near TJ.

BMC Evol Biol. 2014 Aug 8;14:169. doi: 10.1186/s12862-014-0169-0.


Genome-wide characterization of light-regulated genes in Neurospora crassa.

Wu C, Yang F, Smith KM, Peterson M, Dekhang R, Zhang Y, Zucker J, Bredeweg EL, Mallappa C, Zhou X, Lyubetskaya A, Townsend JP, Galagan JE, Freitag M, Dunlap JC, Bell-Pedersen D, Sachs MS.

G3 (Bethesda). 2014 Jul 21;4(9):1731-45. doi: 10.1534/g3.114.012617.


Cellular superspreaders: an epidemiological perspective on HIV infection inside the body.

Talbert-Slagle K, Atkins KE, Yan KK, Khurana E, Gerstein M, Bradley EH, Berg D, Galvani AP, Townsend JP.

PLoS Pathog. 2014 May 8;10(5):e1004092. doi: 10.1371/journal.ppat.1004092. eCollection 2014 May. No abstract available.


Probabilistic uncertainty analysis of epidemiological modeling to guide public health intervention policy.

Gilbert JA, Meyers LA, Galvani AP, Townsend JP.

Epidemics. 2014 Mar;6:37-45. doi: 10.1016/j.epidem.2013.11.002. Epub 2013 Nov 19.


Detecting rare gene transfer events in bacterial populations.

Nielsen KM, Bøhn T, Townsend JP.

Front Microbiol. 2014 Jan 7;4:415. doi: 10.3389/fmicb.2013.00415. eCollection 2014 Jan 7. Review.


Global gene expression and focused knockout analysis reveals genes associated with fungal fruiting body development in Neurospora crassa.

Wang Z, Lopez-Giraldez F, Lehr N, Farré M, Common R, Trail F, Townsend JP.

Eukaryot Cell. 2014 Jan;13(1):154-69. doi: 10.1128/EC.00248-13. Epub 2013 Nov 15.


Potential cost-effectiveness of schistosomiasis treatment for reducing HIV transmission in Africa--the case of Zimbabwean women.

Ndeffo Mbah ML, Poolman EM, Atkins KE, Orenstein EW, Meyers LA, Townsend JP, Galvani AP.

PLoS Negl Trop Dis. 2013 Aug 1;7(8):e2346. doi: 10.1371/journal.pntd.0002346. Print 2013.


Evaluating phylogenetic informativeness as a predictor of phylogenetic signal for metazoan, fungal, and mammalian phylogenomic data sets.

López-Giráldez F, Moeller AH, Townsend JP.

Biomed Res Int. 2013;2013:621604. doi: 10.1155/2013/621604. Epub 2013 Jun 26.


Sex-linked transcriptional divergence in the hermaphrodite fungus Neurospora tetrasperma.

Samils N, Gioti A, Karlsson M, Sun Y, Kasuga T, Bastiaans E, Wang Z, Li N, Townsend JP, Johannesson H.

Proc Biol Sci. 2013 Jun 19;280(1764):20130862. doi: 10.1098/rspb.2013.0862. Print 2013 Aug 7.


Epidemiological mechanisms of genetic resistance to kuru.

Atkins KE, Townsend JP, Medlock J, Galvani AP.

J R Soc Interface. 2013 Jun 5;10(85):20130331. doi: 10.1098/rsif.2013.0331. Print 2013 Aug 6.


AuthorReward: increasing community curation in biological knowledge wikis through automated authorship quantification.

Dai L, Tian M, Wu J, Xiao J, Wang X, Townsend JP, Zhang Z.

Bioinformatics. 2013 Jul 15;29(14):1837-9. doi: 10.1093/bioinformatics/btt284. Epub 2013 Jun 3.


Optimal targeting of seasonal influenza vaccination toward younger ages is robust to parameter uncertainty.

Ndeffo Mbah ML, Medlock J, Meyers LA, Galvani AP, Townsend JP.

Vaccine. 2013 Jun 26;31(30):3079-89. doi: 10.1016/j.vaccine.2013.04.052. Epub 2013 May 16.


Cost-effectiveness of a community-based intervention for reducing the transmission of Schistosoma haematobium and HIV in Africa.

Ndeffo Mbah ML, Kjetland EF, Atkins KE, Poolman EM, Orenstein EW, Meyers LA, Townsend JP, Galvani AP.

Proc Natl Acad Sci U S A. 2013 May 7;110(19):7952-7. doi: 10.1073/pnas.1221396110. Epub 2013 Apr 15. Erratum in: Proc Natl Acad Sci U S A. 2013 May 21;110(21):8750.


Controlling antimicrobial resistance through targeted, vaccine-induced replacement of strains.

Tekle YI, Nielsen KM, Liu J, Pettigrew MM, Meyers LA, Galvani AP, Townsend JP.

PLoS One. 2012;7(12):e50688. doi: 10.1371/journal.pone.0050688. Epub 2012 Dec 5.

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