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Results: 1 to 20 of 107

1.

Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea.

Parkin IA, Koh C, Tang H, Robinson SJ, Kagale S, Clarke WE, Town CD, Nixon J, Krishnakumar V, Bidwell SL, Denoeud F, Belcram H, Links MG, Just J, Clarke C, Bender T, Huebert T, Mason AS, Pires CJ, Barker G, Moore J, Walley PG, Manoli S, Batley J, Edwards D, Nelson MN, Wang X, Paterson AH, King G, Bancroft I, Chalhoub B, Sharpe AG.

Genome Biol. 2014 Jun 10;15(6):R77. [Epub ahead of print]

PMID:
24916971
[PubMed - as supplied by publisher]
Free PMC Article
2.

Consequences of Whole-Genome Triplication as Revealed by Comparative Genomic Analyses of the Wild Radish Raphanus raphanistrum and Three Other Brassicaceae Species.

Moghe GD, Hufnagel DE, Tang H, Xiao Y, Dworkin I, Town CD, Conner JK, Shiu SH.

Plant Cell. 2014 May 29;26(5):1925-1937. [Epub ahead of print]

PMID:
24876251
[PubMed - as supplied by publisher]
Free PMC Article
3.

An improved genome release (version Mt4.0) for the model legume Medicago truncatula.

Tang H, Krishnakumar V, Bidwell S, Rosen B, Chan A, Zhou S, Gentzbittel L, Childs KL, Yandell M, Gundlach H, Mayer KF, Schwartz DC, Town CD.

BMC Genomics. 2014 Apr 27;15:312. doi: 10.1186/1471-2164-15-312.

PMID:
24767513
[PubMed - in process]
Free Article
4.

Phylogenomics and the dynamic genome evolution of the genus Streptococcus.

Richards VP, Palmer SR, Pavinski Bitar PD, Qin X, Weinstock GM, Highlander SK, Town CD, Burne RA, Stanhope MJ.

Genome Biol Evol. 2014 Apr;6(4):741-53. doi: 10.1093/gbe/evu048.

PMID:
24625962
[PubMed - in process]
Free PMC Article
5.

Isolation, propagation, genome analysis and epidemiology of HKU1 betacoronaviruses.

Dominguez SR, Shrivastava S, Berglund A, Qian Z, Góes LG, Halpin RA, Fedorova N, Ransier A, Weston PA, Durigon EL, Jerez JA, Robinson CC, Town CD, Holmes KV.

J Gen Virol. 2014 Apr;95(Pt 4):836-48. doi: 10.1099/vir.0.059832-0. Epub 2014 Jan 6.

PMID:
24394697
[PubMed - indexed for MEDLINE]
6.

An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions.

Haudry A, Platts AE, Vello E, Hoen DR, Leclercq M, Williamson RJ, Forczek E, Joly-Lopez Z, Steffen JG, Hazzouri KM, Dewar K, Stinchcombe JR, Schoen DJ, Wang X, Schmutz J, Town CD, Edger PP, Pires JC, Schumaker KS, Jarvis DE, Mandáková T, Lysak MA, van den Bergh E, Schranz ME, Harrison PM, Moses AM, Bureau TE, Wright SI, Blanchette M.

Nat Genet. 2013 Aug;45(8):891-8. doi: 10.1038/ng.2684. Epub 2013 Jun 30.

PMID:
23817568
[PubMed - indexed for MEDLINE]
7.

Transcriptome sequencing to produce SNP-based genetic maps of onion.

Duangjit J, Bohanec B, Chan AP, Town CD, Havey MJ.

Theor Appl Genet. 2013 Aug;126(8):2093-101. doi: 10.1007/s00122-013-2121-x. Epub 2013 May 21.

PMID:
23689743
[PubMed - indexed for MEDLINE]
8.

The receptor like kinase at Rhg1-a/Rfs2 caused pleiotropic resistance to sudden death syndrome and soybean cyst nematode as a transgene by altering signaling responses.

Srour A, Afzal AJ, Blahut-Beatty L, Hemmati N, Simmonds DH, Li W, Liu M, Town CD, Sharma H, Arelli P, Lightfoot DA.

BMC Genomics. 2012 Aug 2;13:368. doi: 10.1186/1471-2164-13-368.

PMID:
22857610
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Genomic analysis of 16 Colorado human NL63 coronaviruses identifies a new genotype, high sequence diversity in the N-terminal domain of the spike gene and evidence of recombination.

Dominguez SR, Sims GE, Wentworth DE, Halpin RA, Robinson CC, Town CD, Holmes KV.

J Gen Virol. 2012 Nov;93(Pt 11):2387-98. doi: 10.1099/vir.0.044628-0. Epub 2012 Jul 25.

PMID:
22837419
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Characterization of a recombinant canine coronavirus with a distinct receptor-binding (S1) domain.

Regan AD, Millet JK, Tse LP, Chillag Z, Rinaldi VD, Licitra BN, Dubovi EJ, Town CD, Whittaker GR.

Virology. 2012 Sep 1;430(2):90-9. doi: 10.1016/j.virol.2012.04.013. Epub 2012 May 18.

PMID:
22609354
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Identification and characterization of the defensin-like gene family of grapevine.

Giacomelli L, Nanni V, Lenzi L, Zhuang J, Dalla Serra M, Banfield MJ, Town CD, Silverstein KA, Baraldi E, Moser C.

Mol Plant Microbe Interact. 2012 Aug;25(8):1118-31. doi: 10.1094/MPMI-12-11-0323.

PMID:
22550957
[PubMed - indexed for MEDLINE]
Free Article
12.

Novel SSR markers from BAC-end sequences, DArT arrays and a comprehensive genetic map with 1,291 marker loci for chickpea (Cicer arietinum L.).

Thudi M, Bohra A, Nayak SN, Varghese N, Shah TM, Penmetsa RV, Thirunavukkarasu N, Gudipati S, Gaur PM, Kulwal PL, Upadhyaya HD, Kavikishor PB, Winter P, Kahl G, Town CD, Kilian A, Cook DR, Varshney RK.

PLoS One. 2011;6(11):e27275. doi: 10.1371/journal.pone.0027275. Epub 2011 Nov 15.

PMID:
22102885
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

The Medicago genome provides insight into the evolution of rhizobial symbioses.

Young ND, Debellé F, Oldroyd GE, Geurts R, Cannon SB, Udvardi MK, Benedito VA, Mayer KF, Gouzy J, Schoof H, Van de Peer Y, Proost S, Cook DR, Meyers BC, Spannagl M, Cheung F, De Mita S, Krishnakumar V, Gundlach H, Zhou S, Mudge J, Bharti AK, Murray JD, Naoumkina MA, Rosen B, Silverstein KA, Tang H, Rombauts S, Zhao PX, Zhou P, Barbe V, Bardou P, Bechner M, Bellec A, Berger A, Bergès H, Bidwell S, Bisseling T, Choisne N, Couloux A, Denny R, Deshpande S, Dai X, Doyle JJ, Dudez AM, Farmer AD, Fouteau S, Franken C, Gibelin C, Gish J, Goldstein S, González AJ, Green PJ, Hallab A, Hartog M, Hua A, Humphray SJ, Jeong DH, Jing Y, Jöcker A, Kenton SM, Kim DJ, Klee K, Lai H, Lang C, Lin S, Macmil SL, Magdelenat G, Matthews L, McCorrison J, Monaghan EL, Mun JH, Najar FZ, Nicholson C, Noirot C, O'Bleness M, Paule CR, Poulain J, Prion F, Qin B, Qu C, Retzel EF, Riddle C, Sallet E, Samain S, Samson N, Sanders I, Saurat O, Scarpelli C, Schiex T, Segurens B, Severin AJ, Sherrier DJ, Shi R, Sims S, Singer SR, Sinharoy S, Sterck L, Viollet A, Wang BB, Wang K, Wang M, Wang X, Warfsmann J, Weissenbach J, White DD, White JD, Wiley GB, Wincker P, Xing Y, Yang L, Yao Z, Ying F, Zhai J, Zhou L, Zuber A, Dénarié J, Dixon RA, May GD, Schwartz DC, Rogers J, Quétier F, Town CD, Roe BA.

Nature. 2011 Nov 16;480(7378):520-4. doi: 10.1038/nature10625.

PMID:
22089132
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Identification, validation and high-throughput genotyping of transcribed gene SNPs in cassava.

Ferguson ME, Hearne SJ, Close TJ, Wanamaker S, Moskal WA, Town CD, de Young J, Marri PR, Rabbi IY, de Villiers EP.

Theor Appl Genet. 2012 Mar;124(4):685-95. doi: 10.1007/s00122-011-1739-9. Epub 2011 Nov 9.

PMID:
22069119
[PubMed - indexed for MEDLINE]
15.

Genome-wide SNP discovery in tetraploid alfalfa using 454 sequencing and high resolution melting analysis.

Han Y, Kang Y, Torres-Jerez I, Cheung F, Town CD, Zhao PX, Udvardi MK, Monteros MJ.

BMC Genomics. 2011 Jul 6;12:1-11. doi: 10.1186/1471-2164-12-350.

PMID:
21733171
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa.

Hiremath PJ, Farmer A, Cannon SB, Woodward J, Kudapa H, Tuteja R, Kumar A, Bhanuprakash A, Mulaosmanovic B, Gujaria N, Krishnamurthy L, Gaur PM, Kavikishor PB, Shah T, Srinivasan R, Lohse M, Xiao Y, Town CD, Cook DR, May GD, Varshney RK.

Plant Biotechnol J. 2011 Oct;9(8):922-31. doi: 10.1111/j.1467-7652.2011.00625.x. Epub 2011 May 25.

PMID:
21615673
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Defining the transcriptome assembly and its use for genome dynamics and transcriptome profiling studies in pigeonpea (Cajanus cajan L.).

Dubey A, Farmer A, Schlueter J, Cannon SB, Abernathy B, Tuteja R, Woodward J, Shah T, Mulasmanovic B, Kudapa H, Raju NL, Gothalwal R, Pande S, Xiao Y, Town CD, Singh NK, May GD, Jackson S, Varshney RK.

DNA Res. 2011 Jun;18(3):153-64. doi: 10.1093/dnares/dsr007. Epub 2011 May 12.

PMID:
21565938
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Analysis of BAC-end sequences (BESs) and development of BES-SSR markers for genetic mapping and hybrid purity assessment in pigeonpea (Cajanus spp.).

Bohra A, Dubey A, Saxena RK, Penmetsa RV, Poornima KN, Kumar N, Farmer AD, Srivani G, Upadhyaya HD, Gothalwal R, Ramesh S, Singh D, Saxena K, Kishor PB, Singh NK, Town CD, May GD, Cook DR, Varshney RK.

BMC Plant Biol. 2011 Mar 29;11:56. doi: 10.1186/1471-2229-11-56.

PMID:
21447154
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Pigeonpea genomics initiative (PGI): an international effort to improve crop productivity of pigeonpea (Cajanus cajan L.).

Varshney RK, Penmetsa RV, Dutta S, Kulwal PL, Saxena RK, Datta S, Sharma TR, Rosen B, Carrasquilla-Garcia N, Farmer AD, Dubey A, Saxena KB, Gao J, Fakrudin B, Singh MN, Singh BP, Wanjari KB, Yuan M, Srivastava RK, Kilian A, Upadhyaya HD, Mallikarjuna N, Town CD, Bruening GE, He G, May GD, McCombie R, Jackson SA, Singh NK, Cook DR.

Mol Breed. 2010 Oct;26(3):393-408. Epub 2009 Sep 17.

PMID:
20976284
[PubMed]
Free PMC Article
20.

High throughput generation of promoter reporter (GFP) transgenic lines of low expressing genes in Arabidopsis and analysis of their expression patterns.

Xiao YL, Redman JC, Monaghan EL, Zhuang J, Underwood BA, Moskal WA, Wang W, Wu HC, Town CD.

Plant Methods. 2010 Aug 6;6:18. doi: 10.1186/1746-4811-6-18.

PMID:
20687964
[PubMed]
Free PMC Article

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