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Results: 1 to 20 of 44

1.

Comprehensive characterization of complex structural variations in cancer by directly comparing genome sequence reads.

Moncunill V, Gonzalez S, Beà S, Andrieux LO, Salaverria I, Royo C, Martinez L, Puiggròs M, Segura-Wang M, Stütz AM, Navarro A, Royo R, Gelpí JL, Gut IG, López-Otín C, Orozco M, Korbel JO, Campo E, Puente XS, Torrents D.

Nat Biotechnol. 2014 Nov;32(11):1106-12. doi: 10.1038/nbt.3027. Epub 2014 Oct 26.

PMID:
25344728
[PubMed - in process]
2.

Adaptation to environmental factors shapes the organization of regulatory regions in microbial communities.

Fernandez L, Mercader JM, Planas-Fèlix M, Torrents D.

BMC Genomics. 2014 Oct 8;15:877. doi: 10.1186/1471-2164-15-877.

PMID:
25294412
[PubMed - in process]
Free Article
3.

Somatic signature of brain-specific single nucleotide variations in sporadic Alzheimer's disease.

Parcerisas A, Rubio SE, Muhaisen A, Gómez-Ramos A, Pujadas L, Puiggros M, Rossi D, Ureña J, Burgaya F, Pascual M, Torrents D, Rábano A, Avila J, Soriano E.

J Alzheimers Dis. 2014 Jan 1;42(4):1357-82. doi: 10.3233/JAD-140891.

PMID:
25024348
[PubMed - in process]
4.

A genome-wide association study identifies CDHR3 as a susceptibility locus for early childhood asthma with severe exacerbations.

Bønnelykke K, Sleiman P, Nielsen K, Kreiner-Møller E, Mercader JM, Belgrave D, den Dekker HT, Husby A, Sevelsted A, Faura-Tellez G, Mortensen LJ, Paternoster L, Flaaten R, Mølgaard A, Smart DE, Thomsen PF, Rasmussen MA, Bonàs-Guarch S, Holst C, Nohr EA, Yadav R, March ME, Blicher T, Lackie PM, Jaddoe VW, Simpson A, Holloway JW, Duijts L, Custovic A, Davies DE, Torrents D, Gupta R, Hollegaard MV, Hougaard DM, Hakonarson H, Bisgaard H.

Nat Genet. 2014 Jan;46(1):51-5. doi: 10.1038/ng.2830. Epub 2013 Nov 17.

PMID:
24241537
[PubMed - indexed for MEDLINE]
5.

Unravelling the hidden DNA structural/physical code provides novel insights on promoter location.

Durán E, Djebali S, González S, Flores O, Mercader JM, Guigó R, Torrents D, Soler-López M, Orozco M.

Nucleic Acids Res. 2013 Aug;41(15):7220-30. doi: 10.1093/nar/gkt511. Epub 2013 Jun 12.

PMID:
23761436
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Common genetic variants of surfactant protein-D (SP-D) are associated with type 2 diabetes.

Pueyo N, Ortega FJ, Mercader JM, Moreno-Navarrete JM, Sabater M, Bonàs S, Botas P, Delgado E, Ricart W, Martinez-Larrad MT, Serrano-Ríos M, Torrents D, Fernández-Real JM.

PLoS One. 2013;8(4):e60468. doi: 10.1371/journal.pone.0060468. Epub 2013 Apr 5.

PMID:
23577114
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Identification of novel type 2 diabetes candidate genes involved in the crosstalk between the mitochondrial and the insulin signaling systems.

Mercader JM, Puiggros M, Segrè AV, Planet E, Sorianello E, Sebastian D, Rodriguez-Cuenca S, Ribas V, Bonàs-Guarch S, Draghici S, Yang C, Mora S, Vidal-Puig A, Dupuis J; DIAGRAM Consortium, Florez JC; MITIN Consortium, Zorzano A, Torrents D.

PLoS Genet. 2012;8(12):e1003046. doi: 10.1371/journal.pgen.1003046. Epub 2012 Dec 6.

PMID:
23236286
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Impact of methylation on the physical properties of DNA.

Pérez A, Castellazzi CL, Battistini F, Collinet K, Flores O, Deniz O, Ruiz ML, Torrents D, Eritja R, Soler-López M, Orozco M.

Biophys J. 2012 May 2;102(9):2140-8. doi: 10.1016/j.bpj.2012.03.056.

PMID:
22824278
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

The tomato genome sequence provides insights into fleshy fruit evolution.

Tomato Genome Consortium.

Nature. 2012 May 30;485(7400):635-41. doi: 10.1038/nature11119.

PMID:
22660326
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

BLUEPRINT to decode the epigenetic signature written in blood.

Adams D, Altucci L, Antonarakis SE, Ballesteros J, Beck S, Bird A, Bock C, Boehm B, Campo E, Caricasole A, Dahl F, Dermitzakis ET, Enver T, Esteller M, Estivill X, Ferguson-Smith A, Fitzgibbon J, Flicek P, Giehl C, Graf T, Grosveld F, Guigo R, Gut I, Helin K, Jarvius J, Küppers R, Lehrach H, Lengauer T, Lernmark Å, Leslie D, Loeffler M, Macintyre E, Mai A, Martens JH, Minucci S, Ouwehand WH, Pelicci PG, Pendeville H, Porse B, Rakyan V, Reik W, Schrappe M, Schübeler D, Seifert M, Siebert R, Simmons D, Soranzo N, Spicuglia S, Stratton M, Stunnenberg HG, Tanay A, Torrents D, Valencia A, Vellenga E, Vingron M, Walter J, Willcocks S.

Nat Biotechnol. 2012 Mar 7;30(3):224-6. doi: 10.1038/nbt.2153. No abstract available.

PMID:
22398613
[PubMed - indexed for MEDLINE]
11.

ReLA, a local alignment search tool for the identification of distal and proximal gene regulatory regions and their conserved transcription factor binding sites.

González S, Montserrat-Sentís B, Sánchez F, Puiggròs M, Blanco E, Ramirez A, Torrents D.

Bioinformatics. 2012 Mar 15;28(6):763-70. doi: 10.1093/bioinformatics/bts024. Epub 2012 Jan 16.

PMID:
22253291
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Whole-genome sequencing identifies recurrent mutations in chronic lymphocytic leukaemia.

Puente XS, Pinyol M, Quesada V, Conde L, Ordóñez GR, Villamor N, Escaramis G, Jares P, Beà S, González-Díaz M, Bassaganyas L, Baumann T, Juan M, López-Guerra M, Colomer D, Tubío JM, López C, Navarro A, Tornador C, Aymerich M, Rozman M, Hernández JM, Puente DA, Freije JM, Velasco G, Gutiérrez-Fernández A, Costa D, Carrió A, Guijarro S, Enjuanes A, Hernández L, Yagüe J, Nicolás P, Romeo-Casabona CM, Himmelbauer H, Castillo E, Dohm JC, de Sanjosé S, Piris MA, de Alava E, San Miguel J, Royo R, Gelpí JL, Torrents D, Orozco M, Pisano DG, Valencia A, Guigó R, Bayés M, Heath S, Gut M, Klatt P, Marshall J, Raine K, Stebbings LA, Futreal PA, Stratton MR, Campbell PJ, Gut I, López-Guillermo A, Estivill X, Montserrat E, López-Otín C, Campo E.

Nature. 2011 Jun 5;475(7354):101-5. doi: 10.1038/nature10113.

PMID:
21642962
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Enterotypes of the human gut microbiome.

Arumugam M, Raes J, Pelletier E, Le Paslier D, Yamada T, Mende DR, Fernandes GR, Tap J, Bruls T, Batto JM, Bertalan M, Borruel N, Casellas F, Fernandez L, Gautier L, Hansen T, Hattori M, Hayashi T, Kleerebezem M, Kurokawa K, Leclerc M, Levenez F, Manichanh C, Nielsen HB, Nielsen T, Pons N, Poulain J, Qin J, Sicheritz-Ponten T, Tims S, Torrents D, Ugarte E, Zoetendal EG, Wang J, Guarner F, Pedersen O, de Vos WM, Brunak S, Doré J; MetaHIT Consortium, Antolín M, Artiguenave F, Blottiere HM, Almeida M, Brechot C, Cara C, Chervaux C, Cultrone A, Delorme C, Denariaz G, Dervyn R, Foerstner KU, Friss C, van de Guchte M, Guedon E, Haimet F, Huber W, van Hylckama-Vlieg J, Jamet A, Juste C, Kaci G, Knol J, Lakhdari O, Layec S, Le Roux K, Maguin E, Mérieux A, Melo Minardi R, M'rini C, Muller J, Oozeer R, Parkhill J, Renault P, Rescigno M, Sanchez N, Sunagawa S, Torrejon A, Turner K, Vandemeulebrouck G, Varela E, Winogradsky Y, Zeller G, Weissenbach J, Ehrlich SD, Bork P.

Nature. 2011 May 12;473(7346):174-80. doi: 10.1038/nature09944. Epub 2011 Apr 20. Erratum in: Nature. 2011 Jun 30;474(7353):666. Nature. 2014 Feb 27;506(7489):516.

PMID:
21508958
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Selective maintenance of Drosophila tandemly arranged duplicated genes during evolution.

Quijano C, Tomancak P, Lopez-Marti J, Suyama M, Bork P, Milan M, Torrents D, Manzanares M.

Genome Biol. 2008;9(12):R176. doi: 10.1186/gb-2008-9-12-r176. Epub 2008 Dec 16.

PMID:
19087263
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Projection structure of a member of the amino acid/polyamine/organocation transporter superfamily.

Casagrande F, Ratera M, Schenk AD, Chami M, Valencia E, Lopez JM, Torrents D, Engel A, Palacin M, Fotiadis D.

J Biol Chem. 2008 Nov 28;283(48):33240-8. doi: 10.1074/jbc.M806917200. Epub 2008 Sep 25.

PMID:
18819925
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Is there selection for the pace of successive inactivation of the arpAT gene in primates?

Casals F, Ferrer-Admetlla A, Chillarón J, Torrents D, Palacín M, Bertranpetit J.

J Mol Evol. 2008 Jul;67(1):23-8. doi: 10.1007/s00239-008-9120-6. Epub 2008 Jun 20.

PMID:
18566733
[PubMed - indexed for MEDLINE]
17.

DNAlive: a tool for the physical analysis of DNA at the genomic scale.

Goñi JR, Fenollosa C, Pérez A, Torrents D, Orozco M.

Bioinformatics. 2008 Aug 1;24(15):1731-2. doi: 10.1093/bioinformatics/btn259. Epub 2008 Jun 9.

PMID:
18544548
[PubMed - indexed for MEDLINE]
Free Article
18.

Determining promoter location based on DNA structure first-principles calculations.

Goñi JR, Pérez A, Torrents D, Orozco M.

Genome Biol. 2007;8(12):R263.

PMID:
18072969
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Effect of sow vaccination against Mycoplasma hyopneumoniae on sow and piglet colonization and seroconversion, and pig lung lesions at slaughter.

Sibila M, Bernal R, Torrents D, Riera P, Llopart D, Calsamiglia M, Segalés J.

Vet Microbiol. 2008 Feb 5;127(1-2):165-70. Epub 2007 Aug 1.

PMID:
17826008
[PubMed - indexed for MEDLINE]
20.

Functional and structural characterization of the first prokaryotic member of the L-amino acid transporter (LAT) family: a model for APC transporters.

Reig N, del Rio C, Casagrande F, Ratera M, Gelpí JL, Torrents D, Henderson PJ, Xie H, Baldwin SA, Zorzano A, Fotiadis D, Palacín M.

J Biol Chem. 2007 May 4;282(18):13270-81. Epub 2007 Mar 6.

PMID:
17344220
[PubMed - indexed for MEDLINE]
Free Article

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