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Automatic DNA Diagnosis for 1D Gel Electrophoresis Images using Bio-image Processing Technique.

Intarapanich A, Kaewkamnerd S, Shaw PJ, Ukosakit K, Tragoonrung S, Tongsima S.

BMC Genomics. 2015 Dec 9;16 Suppl 12:S15. doi: 10.1186/1471-2164-16-S12-S15. Epub 2015 Dec 9.


Polymorphisms in drug-resistant-related genes shared among drug-resistant and pan-susceptible strains of sequence type 10, Beijing family of Mycobacterium tuberculosis.

Regmi SM, Coker OO, Kulawonganunchai S, Tongsima S, Prammananan T, Viratyosin W, Thaipisuttikul I, Chaiprasert A.

Int J Mycobacteriol. 2015 Mar;4(1):67-72. doi: 10.1016/j.ijmyco.2014.11.050. Epub 2015 Jan 9.


Genetic analysis of Thai cattle reveals a Southeast Asian indicine ancestry.

Wangkumhang P, Wilantho A, Shaw PJ, Flori L, Moazami-Goudarzi K, Gautier M, Duangjinda M, Assawamakin A, Tongsima S.

PeerJ. 2015 Oct 27;3:e1318. doi: 10.7717/peerj.1318. eCollection 2015.


iNJclust: Iterative Neighbor-Joining Tree Clustering Framework for Inferring Population Structure.

Limpiti T, Amornbunchornvej C, Intarapanich A, Assawamakin A, Tongsima S.

IEEE/ACM Trans Comput Biol Bioinform. 2014 Sep-Oct;11(5):903-14. doi: 10.1109/TCBB.2014.2322372.


Whole genome sequence analysis of multidrug-resistant Mycobacterium tuberculosis Beijing isolates from an outbreak in Thailand.

Regmi SM, Chaiprasert A, Kulawonganunchai S, Tongsima S, Coker OO, Prammananan T, Viratyosin W, Thaipisuttikul I.

Mol Genet Genomics. 2015 Oct;290(5):1933-41. doi: 10.1007/s00438-015-1048-0. Epub 2015 Apr 24.


Understanding the molecular basis of EGFR kinase domain/MIG-6 peptide recognition complex using computational analyses.

Moonrin N, Songtawee N, Rattanabunyong S, Chunsrivirot S, Mokmak W, Tongsima S, Choowongkomon K.

BMC Bioinformatics. 2015 Mar 27;16:103. doi: 10.1186/s12859-015-0528-x.


microPIR2: a comprehensive database for human-mouse comparative study of microRNA-promoter interactions.

Piriyapongsa J, Bootchai C, Ngamphiw C, Tongsima S.

Database (Oxford). 2014 Nov 25;2014:bau115. doi: 10.1093/database/bau115. Print 2014.


Roles of intragenic and intergenic L1s in mouse and human.

Ngamphiw C, Tongsima S, Mutirangura A.

PLoS One. 2014 Nov 19;9(11):e113434. doi: 10.1371/journal.pone.0113434. eCollection 2014.


Computational analyses of curcuminoid analogs against kinase domain of HER2.

Yim-im W, Sawatdichaikul O, Semsri S, Horata N, Mokmak W, Tongsima S, Suksamrarn A, Choowongkomon K.

BMC Bioinformatics. 2014 Aug 3;15:261. doi: 10.1186/1471-2105-15-261.


Structural and functional diversity of free-living microorganisms in reef surface, Kra island, Thailand.

Somboonna N, Wilantho A, Assawamakin A, Monanunsap S, Sangsrakru D, Tangphatsornruang S, Tongsima S.

BMC Genomics. 2014 Jul 18;15:607. doi: 10.1186/1471-2164-15-607.


Whole genome and exome sequencing of monozygotic twins with trisomy 21, discordant for a congenital heart defect and epilepsy.

Chaiyasap P, Kulawonganunchai S, Srichomthong C, Tongsima S, Suphapeetiporn K, Shotelersuk V.

PLoS One. 2014 Jun 20;9(6):e100191. doi: 10.1371/journal.pone.0100191. eCollection 2014.


Molecular dynamics of interactions between rigid and flexible antifolates and dihydrofolate reductase from pyrimethamine-sensitive and pyrimethamine-resistant Plasmodium falciparum.

Mokmak W, Chunsrivirot S, Hannongbua S, Yuthavong Y, Tongsima S, Kamchonwongpaisan S.

Chem Biol Drug Des. 2014 Oct;84(4):450-61. doi: 10.1111/cbdd.12334. Epub 2014 Jun 4.


Microbial ecology of Thailand tsunami and non-tsunami affected terrestrials.

Somboonna N, Wilantho A, Jankaew K, Assawamakin A, Sangsrakru D, Tangphatsornruang S, Tongsima S.

PLoS One. 2014 Apr 7;9(4):e94236. doi: 10.1371/journal.pone.0094236. eCollection 2014.


Population structure of four Thai indigenous chicken breeds.

Mekchay S, Supakankul P, Assawamakin A, Wilantho A, Chareanchim W, Tongsima S.

BMC Genet. 2014 Mar 27;15:40. doi: 10.1186/1471-2156-15-40.


MetaSel: a metaphase selection tool using a Gaussian-based classification technique.

Uttamatanin R, Yuvapoositanon P, Intarapanich A, Kaewkamnerd S, Phuksaritanon R, Assawamakin A, Tongsima S.

BMC Bioinformatics. 2013;14 Suppl 16:S13. doi: 10.1186/1471-2105-14-S16-S13. Epub 2013 Oct 22.


Extracting predictive SNPs in Crohn's disease using a vacillating genetic algorithm and a neural classifier in case-control association studies.

Anekboon K, Lursinsap C, Phimoltares S, Fucharoen S, Tongsima S.

Comput Biol Med. 2014 Jan;44:57-65. doi: 10.1016/j.compbiomed.2013.09.017. Epub 2013 Sep 29.


Insight into the peopling of Mainland Southeast Asia from Thai population genetic structure.

Wangkumhang P, Shaw PJ, Chaichoompu K, Ngamphiw C, Assawamakin A, Nuinoon M, Sripichai O, Svasti S, Fucharoen S, Praphanphoj V, Tongsima S.

PLoS One. 2013 Nov 4;8(11):e79522. doi: 10.1371/journal.pone.0079522. eCollection 2013.


Biomarker selection and classification of "-omics" data using a two-step bayes classification framework.

Assawamakin A, Prueksaaroon S, Kulawonganunchai S, Shaw PJ, Varavithya V, Ruangrajitpakorn T, Tongsima S.

Biomed Res Int. 2013;2013:148014. doi: 10.1155/2013/148014. Epub 2013 Sep 11.


Distal effect of amino acid substitutions in CYP2C9 polymorphic variants causes differences in interatomic interactions against (S)-warfarin.

Lertkiatmongkol P, Assawamakin A, White G, Chopra G, Rongnoparut P, Samudrala R, Tongsima S.

PLoS One. 2013 Sep 2;8(9):e74053. doi: 10.1371/journal.pone.0074053. eCollection 2013. Erratum in: PLoS One. 2013;8(9). doi:10.1371/annotation/416be1ef-f439-445a-96f8-b1d2f01c6957.


Metagenomic profiles of free-living archaea, bacteria and small eukaryotes in coastal areas of Sichang island, Thailand.

Somboonna N, Assawamakin A, Wilantho A, Tangphatsornruang S, Tongsima S.

BMC Genomics. 2012;13 Suppl 7:S29. doi: 10.1186/1471-2164-13-S7-S29. Epub 2012 Dec 13.

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