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Results: 1 to 20 of 46

1.

Histopathologic alterations associated with global gene expression due to chronic dietary TCDD exposure in juvenile zebrafish.

Liu Q, Spitsbergen JM, Cariou R, Huang CY, Jiang N, Goetz G, Hutz RJ, Tonellato PJ, Carvan MJ 3rd.

PLoS One. 2014 Jul 2;9(7):e100910. doi: 10.1371/journal.pone.0100910. eCollection 2014.

PMID:
24988445
[PubMed - in process]
Free PMC Article
2.

COSMOS: Python library for massively parallel workflows.

Gafni E, Luquette LJ, Lancaster AK, Hawkins JB, Jung JY, Souilmi Y, Wall DP, Tonellato PJ.

Bioinformatics. 2014 Jun 30. pii: btu385. [Epub ahead of print]

PMID:
24982428
[PubMed - as supplied by publisher]
Free Article
3.

Analysis of sequence-based copy number variation detection tools for cancer studies.

Nabavi S, Cai Z, Tonellato PJ.

AMIA Jt Summits Transl Sci Proc. 2013 Mar 18;2013:124. eCollection 2013. No abstract available.

PMID:
24303319
[PubMed]
Free PMC Article
4.

Streaming support for data intensive cloud-based sequence analysis.

Issa SA, Kienzler R, El-Kalioby M, Tonellato PJ, Wall D, Bruggmann R, Abouelhoda M.

Biomed Res Int. 2013;2013:791051. doi: 10.1155/2013/791051. Epub 2013 Apr 24.

PMID:
23710461
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Differential gene expression associated with dietary methylmercury (MeHg) exposure in rainbow trout (Oncorhynchus mykiss) and zebrafish (Danio rerio).

Liu Q, Basu N, Goetz G, Jiang N, Hutz RJ, Tonellato PJ, Carvan MJ 3rd.

Ecotoxicology. 2013 May;22(4):740-51. doi: 10.1007/s10646-013-1066-9. Epub 2013 Mar 26.

PMID:
23529582
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Ultradense array CGH and discovery of micro-copy number alterations and gene fusions in the cancer genome.

Przybytkowski E, Aguilar-Mahecha A, Nabavi S, Tonellato PJ, Basik M.

Methods Mol Biol. 2013;973:15-38. doi: 10.1007/978-1-62703-281-0_2.

PMID:
23412781
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

A systems approach to designing effective clinical trials using simulations.

Fusaro VA, Patil P, Chi CL, Contant CF, Tonellato PJ.

Circulation. 2013 Jan 29;127(4):517-26. doi: 10.1161/CIRCULATIONAHA.112.123034. Epub 2012 Dec 21.

PMID:
23261867
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

The future of genomics in pathology.

Wall DP, Tonellato PJ.

F1000 Med Rep. 2012;4:14. doi: 10.3410/M4-14. Epub 2012 Jul 2.

PMID:
22802873
[PubMed]
Free PMC Article
9.

A simulation platform to examine heterogeneity influence on treatment.

Chi CL, Fusaro VA, Patil P, Crawford MA, Content CF, Tonellato PJ.

AMIA Jt Summits Transl Sci Proc. 2012;2012:19-24. Epub 2012 Mar 19.

PMID:
22779042
[PubMed]
Free PMC Article
10.

Systems analysis of inflammatory bowel disease based on comprehensive gene information.

Suzuki S, Takai-Igarashi T, Fukuoka Y, Wall DP, Tanaka H, Tonellato PJ.

BMC Med Genet. 2012 Apr 5;13:25. doi: 10.1186/1471-2350-13-25.

PMID:
22480395
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Biomedical cloud computing with Amazon Web Services.

Fusaro VA, Patil P, Gafni E, Wall DP, Tonellato PJ.

PLoS Comput Biol. 2011 Aug;7(8):e1002147. doi: 10.1371/journal.pcbi.1002147. Epub 2011 Aug 25.

PMID:
21901085
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside.

Luciano JS, Andersson B, Batchelor C, Bodenreider O, Clark T, Denney CK, Domarew C, Gambet T, Harland L, Jentzsch A, Kashyap V, Kos P, Kozlovsky J, Lebo T, Marshall SM, McCusker JP, McGuinness DL, Ogbuji C, Pichler E, Powers RL, Prud'hommeaux E, Samwald M, Schriml L, Tonellato PJ, Whetzel PL, Zhao J, Stephens S, Dumontier M.

J Biomed Semantics. 2011 May 17;2 Suppl 2:S1. doi: 10.1186/2041-1480-2-S2-S1.

PMID:
21624155
[PubMed]
Free PMC Article
13.

A national agenda for the future of pathology in personalized medicine: report of the proceedings of a meeting at the Banbury Conference Center on genome-era pathology, precision diagnostics, and preemptive care: a stakeholder summit.

Tonellato PJ, Crawford JM, Boguski MS, Saffitz JE.

Am J Clin Pathol. 2011 May;135(5):668-72. doi: 10.1309/AJCP9GDNLWB4GACI. No abstract available.

PMID:
21502420
[PubMed - indexed for MEDLINE]
Free Article
14.

Cost-effective cloud computing: a case study using the comparative genomics tool, roundup.

Kudtarkar P, Deluca TF, Fusaro VA, Tonellato PJ, Wall DP.

Evol Bioinform Online. 2010 Dec 22;6:197-203. doi: 10.4137/EBO.S6259.

PMID:
21258651
[PubMed]
Free PMC Article
15.

Genotator: a disease-agnostic tool for genetic annotation of disease.

Wall DP, Pivovarov R, Tong M, Jung JY, Fusaro VA, DeLuca TF, Tonellato PJ.

BMC Med Genomics. 2010 Oct 29;3:50. doi: 10.1186/1755-8794-3-50.

PMID:
21034472
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Cloud computing for comparative genomics.

Wall DP, Kudtarkar P, Fusaro VA, Pivovarov R, Patil P, Tonellato PJ.

BMC Bioinformatics. 2010 May 18;11:259. doi: 10.1186/1471-2105-11-259.

PMID:
20482786
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

BN phenome: detailed characterization of the cardiovascular, renal, and pulmonary systems of the sequenced rat.

Kwitek AE, Jacob HJ, Baker JE, Dwinell MR, Forster HV, Greene AS, Kunert MP, Lombard JH, Mattson DL, Pritchard KA Jr, Roman RJ, Tonellato PJ, Cowley AW Jr.

Physiol Genomics. 2006 Apr 13;25(2):303-13. Epub 2006 Feb 14.

PMID:
16478827
[PubMed - indexed for MEDLINE]
Free Article
18.

Tools and strategies for physiological genomics: the Rat Genome Database.

Twigger SN, Pasko D, Nie J, Shimoyama M, Bromberg S, Campbell D, Chen J, dela Cruz N, Fan C, Foote C, Harris G, Hickmann B, Ji Y, Jin W, Li D, Mathis J, Nenasheva N, Nigam R, Petri V, Reilly D, Ruotti V, Schauberger E, Seiler K, Slyper R, Smith J, Wang W, Wu W, Zhao L, Zuniga-Meyer A, Tonellato PJ, Kwitek AE, Jacob HJ.

Physiol Genomics. 2005 Oct 17;23(2):246-56. Epub 2005 Aug 16.

PMID:
16106031
[PubMed - indexed for MEDLINE]
Free Article
19.

Automated analysis of conserved syntenies for the zebrafish genome.

Postlethwait J, Ruotti V, Carvan MJ, Tonellato PJ.

Methods Cell Biol. 2004;77:255-71. No abstract available.

PMID:
15602916
[PubMed - indexed for MEDLINE]
20.

A novel approach for high-quality microarray processing using third-dye array visualization technology.

Wang X, Jiang N, Feng X, Xie Y, Tonellato PJ, Ghosh S, Hessner MJ.

IEEE Trans Nanobioscience. 2003 Dec;2(4):193-201.

PMID:
15376909
[PubMed - indexed for MEDLINE]

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