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Results: 1 to 20 of 46

1.

De novo protein sequencing by combining top-down and bottom-up tandem mass spectra.

Liu X, Dekker LJ, Wu S, Vanduijn MM, Luider TM, Tolić N, Kou Q, Dvorkin M, Alexandrova S, Vyatkina K, Paša-Tolić L, Pevzner PA.

J Proteome Res. 2014 Jul 3;13(7):3241-8. doi: 10.1021/pr401300m. Epub 2014 Jun 18.

PMID:
24874765
[PubMed - in process]
2.

The first pilot project of the consortium for top-down proteomics: a status report.

Dang X, Scotcher J, Wu S, Chu RK, Tolić N, Ntai I, Thomas PM, Fellers RT, Early BP, Zheng Y, Durbin KR, Leduc RD, Wolff JJ, Thompson CJ, Pan J, Han J, Shaw JB, Salisbury JP, Easterling M, Borchers CH, Brodbelt JS, Agar JN, Paša-Tolić L, Kelleher NL, Young NL.

Proteomics. 2014 May;14(10):1130-40. doi: 10.1002/pmic.201300438. Epub 2014 Apr 14.

PMID:
24644084
[PubMed - in process]
3.

An integrated top-down and bottom-up proteomic approach to characterize the antigen-binding fragment of antibodies.

Dekker L, Wu S, Vanduijn M, Tolić N, Stingl C, Zhao R, Luider T, Paša-Tolić L.

Proteomics. 2014 May;14(10):1239-48. doi: 10.1002/pmic.201300366. Epub 2014 Apr 13.

PMID:
24634104
[PubMed - in process]
4.

Quantitative analysis of human salivary gland-derived intact proteome using top-down mass spectrometry.

Wu S, Brown JN, Tolić N, Meng D, Liu X, Zhang H, Zhao R, Moore RJ, Pevzner P, Smith RD, Paša-Tolić L.

Proteomics. 2014 May;14(10):1211-22. doi: 10.1002/pmic.201300378. Epub 2014 Apr 13.

PMID:
24591407
[PubMed - in process]
5.

Characterization of intact N- and O-linked glycopeptides using higher energy collisional dissociation.

Cao L, Tolić N, Qu Y, Meng D, Zhao R, Zhang Q, Moore RJ, Zink EM, Lipton MS, Paša-Tolić L, Wu S.

Anal Biochem. 2014 May 1;452:96-102. doi: 10.1016/j.ab.2014.01.003. Epub 2014 Jan 15.

PMID:
24440233
[PubMed - in process]
6.

Identification of ultramodified proteins using top-down tandem mass spectra.

Liu X, Hengel S, Wu S, Tolić N, Pasa-Tolić L, Pevzner PA.

J Proteome Res. 2013 Dec 6;12(12):5830-8. doi: 10.1021/pr400849y. Epub 2013 Nov 15.

PMID:
24188097
[PubMed - indexed for MEDLINE]
7.

Haloferax volcanii archaeosortase is required for motility, mating, and C-terminal processing of the S-layer glycoprotein.

Abdul Halim MF, Pfeiffer F, Zou J, Frisch A, Haft D, Wu S, Tolić N, Brewer H, Payne SH, Paša-Tolić L, Pohlschroder M.

Mol Microbiol. 2013 Jun;88(6):1164-75. doi: 10.1111/mmi.12248. Epub 2013 May 28.

PMID:
23651326
[PubMed - indexed for MEDLINE]
8.

Top-Down Characterization of the Post-Translationally Modified Intact Periplasmic Proteome from the Bacterium Novosphingobium aromaticivorans.

Wu S, Brown RN, Payne SH, Meng D, Zhao R, Tolić N, Cao L, Shukla A, Monroe ME, Moore RJ, Lipton MS, Paša-Tolić L.

Int J Proteomics. 2013;2013:279590. doi: 10.1155/2013/279590. Epub 2013 Mar 10.

PMID:
23555055
[PubMed]
Free PMC Article
9.

Enhanced top-down characterization of histone post-translational modifications.

Tian Z, Tolić N, Zhao R, Moore RJ, Hengel SM, Robinson EW, Stenoien DL, Wu S, Smith RD, Paša-Tolić L.

Genome Biol. 2012 Oct 3;13(10):R86. doi: 10.1186/gb-2012-13-10-r86.

PMID:
23034525
[PubMed - in process]
Free PMC Article
10.
11.

Experimental annotation of post-translational features and translated coding regions in the pathogen Salmonella Typhimurium.

Ansong C, Tolić N, Purvine SO, Porwollik S, Jones M, Yoon H, Payne SH, Martin JL, Burnet MC, Monroe ME, Venepally P, Smith RD, Peterson SN, Heffron F, McClelland M, Adkins JN.

BMC Genomics. 2011 Aug 25;12:433. doi: 10.1186/1471-2164-12-433.

PMID:
21867535
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Effectiveness of CID, HCD, and ETD with FT MS/MS for degradomic-peptidomic analysis: comparison of peptide identification methods.

Shen Y, Tolić N, Xie F, Zhao R, Purvine SO, Schepmoes AA, Moore RJ, Anderson GA, Smith RD.

J Proteome Res. 2011 Sep 2;10(9):3929-43. doi: 10.1021/pr200052c. Epub 2011 Aug 15.

PMID:
21678914
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

An integrated top-down and bottom-up strategy for characterization of protein isoforms and modifications.

Wu S, Tolić N, Tian Z, Robinson EW, Paša-Tolić L.

Methods Mol Biol. 2011;694:291-304. doi: 10.1007/978-1-60761-977-2_18.

PMID:
21082441
[PubMed - indexed for MEDLINE]
14.

Blood peptidome-degradome profile of breast cancer.

Shen Y, Tolić N, Liu T, Zhao R, Petritis BO, Gritsenko MA, Camp DG, Moore RJ, Purvine SO, Esteva FJ, Smith RD.

PLoS One. 2010 Oct 18;5(10):e13133. doi: 10.1371/journal.pone.0013133.

PMID:
20976186
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Two-dimensional liquid chromatography system for online top-down mass spectrometry.

Tian Z, Zhao R, Tolić N, Moore RJ, Stenoien DL, Robinson EW, Smith RD, Paša-Tolić L.

Proteomics. 2010 Oct;10(20):3610-20. doi: 10.1002/pmic.201000367.

PMID:
20879039
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Integrated post-experiment monoisotopic mass refinement: an integrated approach to accurately assign monoisotopic precursor masses to tandem mass spectrometric data.

Jung HJ, Purvine SO, Kim H, Petyuk VA, Hyung SW, Monroe ME, Mun DG, Kim KC, Park JM, Kim SJ, Tolic N, Slysz GW, Moore RJ, Zhao R, Adkins JN, Anderson GA, Lee H, Camp DG 2nd, Yu MH, Smith RD, Lee SW.

Anal Chem. 2010 Oct 15;82(20):8510-8. doi: 10.1021/ac101388b.

PMID:
20863060
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Pressurized pepsin digestion in proteomics: an automatable alternative to trypsin for integrated top-down bottom-up proteomics.

López-Ferrer D, Petritis K, Robinson EW, Hixson KK, Tian Z, Lee JH, Lee SW, Tolić N, Weitz KK, Belov ME, Smith RD, Pasa-Tolić L.

Mol Cell Proteomics. 2011 Feb;10(2):M110.001479. doi: 10.1074/mcp.M110.001479. Epub 2010 Jul 12.

PMID:
20627868
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Identification of disulfide bonds in protein proteolytic degradation products using de novo-protein unique sequence tags approach.

Shen Y, Tolić N, Purvine SO, Smith RD.

J Proteome Res. 2010 Aug 6;9(8):4053-60. doi: 10.1021/pr1002559.

PMID:
20590115
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Strategy for degradomic-peptidomic analysis of human blood plasma.

Shen Y, Liu T, Tolić N, Petritis BO, Zhao R, Moore RJ, Purvine SO, Camp DG, Smith RD.

J Proteome Res. 2010 May 7;9(5):2339-46. doi: 10.1021/pr901083m.

PMID:
20377236
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Identification of cross-linked peptides after click-based enrichment using sequential collision-induced dissociation and electron transfer dissociation tandem mass spectrometry.

Chowdhury SM, Du X, Tolić N, Wu S, Moore RJ, Mayer MU, Smith RD, Adkins JN.

Anal Chem. 2009 Jul 1;81(13):5524-32. doi: 10.1021/ac900853k.

PMID:
19496583
[PubMed - indexed for MEDLINE]
Free PMC Article

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