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Comment on "Ribosome utilizes the minimum free energy changes to achieve the highest decoding rate and fidelity".

Savir Y, Tlusty T.

Phys Rev E. 2016 May;93(5-2):056401. Epub 2016 May 13.


Self-referring DNA and protein: a remark on physical and geometrical aspects.

Tlusty T.

Philos Trans A Math Phys Eng Sci. 2016 Mar 13;374(2063). pii: 20150070. doi: 10.1098/rsta.2015.0070.


Where Two Are Fighting, the Third Wins: Stronger Selection Facilitates Greater Polymorphism in Traits Conferring Competition-Dispersal Tradeoffs.

Lampert A, Tlusty T.

PLoS One. 2016 Feb 4;11(2):e0147970. doi: 10.1371/journal.pone.0147970. eCollection 2016.


Factors associated with successful magnetic resonance-guided focused ultrasound treatment: efficiency of acoustic energy delivery through the skull.

Chang WS, Jung HH, Zadicario E, Rachmilevitch I, Tlusty T, Vitek S, Chang JW.

J Neurosurg. 2016 Feb;124(2):411-6. doi: 10.3171/2015.3.JNS142592. Epub 2015 Sep 11.


Evolution of bow-tie architectures in biology.

Friedlander T, Mayo AE, Tlusty T, Alon U.

PLoS Comput Biol. 2015 Mar 23;11(3):e1004055. doi: 10.1371/journal.pcbi.1004055. eCollection 2015 Mar.


Asymmetric effect of mechanical stress on the forward and reverse reaction catalyzed by an enzyme.

Joseph C, Tseng CY, Zocchi G, Tlusty T.

PLoS One. 2014 Jul 7;9(7):e101442. doi: 10.1371/journal.pone.0101442. eCollection 2014.


Mutation rules and the evolution of sparseness and modularity in biological systems.

Friedlander T, Mayo AE, Tlusty T, Alon U.

PLoS One. 2013 Aug 6;8(8):e70444. doi: 10.1371/journal.pone.0070444. Print 2013. Erratum in: PLoS One. 2015;10(3):e0118129.


The ribosome as an optimal decoder: a lesson in molecular recognition.

Savir Y, Tlusty T.

Cell. 2013 Apr 11;153(2):471-9. doi: 10.1016/j.cell.2013.03.032.


Resonance-induced multimodal body-size distributions in ecosystems.

Lampert A, Tlusty T.

Proc Natl Acad Sci U S A. 2013 Jan 2;110(1):205-9. doi: 10.1073/pnas.1211761110. Epub 2012 Dec 17.


Effects of long DNA folding and small RNA stem-loop in thermophoresis.

Maeda YT, Tlusty T, Libchaber A.

Proc Natl Acad Sci U S A. 2012 Oct 30;109(44):17972-7. doi: 10.1073/pnas.1215764109. Epub 2012 Oct 15.


Modeling and experimental methods to probe the link between global transcription and spatial organization of chromosomes.

Iyer KV, Maharana S, Gupta S, Libchaber A, Tlusty T, Shivashankar GV.

PLoS One. 2012;7(10):e46628. doi: 10.1371/journal.pone.0046628. Epub 2012 Oct 1.


Balancing speed and accuracy of polyclonal T cell activation: a role for extracellular feedback.

Savir Y, Waysbort N, Antebi YE, Tlusty T, Friedman N.

BMC Syst Biol. 2012 Aug 27;6:111. doi: 10.1186/1752-0509-6-111.


Density-dependent cooperation as a mechanism for persistence and coexistence.

Lampert A, Tlusty T.

Evolution. 2011 Oct;65(10):2750-9. doi: 10.1111/j.1558-5646.2011.01364.x. Epub 2011 Jun 27.


RecA-mediated homology search as a nearly optimal signal detection system.

Savir Y, Tlusty T.

Mol Cell. 2010 Nov 12;40(3):388-96. doi: 10.1016/j.molcel.2010.10.020.


Leaders of neuronal cultures in a quorum percolation model.

Eckmann JP, Moses E, Stetter O, Tlusty T, Zbinden C.

Front Comput Neurosci. 2010 Sep 22;4. pii: 132. doi: 10.3389/fncom.2010.00132. eCollection 2010.


Effective induction of protective systemic immunity with nasally administered vaccines adjuvanted with IL-1.

Gwinn WM, Kirwan SM, Wang SH, Ashcraft KA, Sparks NL, Doil CR, Tlusty TG, Casey LS, Hollingshead SK, Briles DE, Dondero RS, Hickey AJ, Foster WM, Staats HF.

Vaccine. 2010 Oct 4;28(42):6901-14. doi: 10.1016/j.vaccine.2010.08.006. Epub 2010 Aug 17. Erratum in: Vaccine. 2011 Mar 24;29(15):2821.


A colorful origin for the genetic code: information theory, statistical mechanics and the emergence of molecular codes.

Tlusty T.

Phys Life Rev. 2010 Sep;7(3):362-76. doi: 10.1016/j.plrev.2010.06.002. Epub 2010 Jun 4. Review.


Messenger RNA fluctuations and regulatory RNAs shape the dynamics of a negative feedback loop.

Rodríguez Martínez M, Soriano J, Tlusty T, Pilpel Y, Furman I.

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Mar;81(3 Pt 1):031924. Epub 2010 Mar 30.


Cross-species analysis traces adaptation of Rubisco toward optimality in a low-dimensional landscape.

Savir Y, Noor E, Milo R, Tlusty T.

Proc Natl Acad Sci U S A. 2010 Feb 23;107(8):3475-80. doi: 10.1073/pnas.0911663107. Epub 2010 Feb 8.

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