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Items: 1 to 20 of 31

1.

A Specialized Histone H1 Variant Is Required for Adaptive Responses to Complex Abiotic Stress and Related DNA Methylation in Arabidopsis.

Rutowicz K, Puzio M, Halibart-Puzio J, Lirski M, Kotliński M, Kroteń MA, Knizewski L, Lange B, Muszewska A, Śniegowska-Świerk K, Kościelniak J, Iwanicka-Nowicka R, Buza K, Janowiak F, Żmuda K, Jõesaar I, Laskowska-Kaszub K, Fogtman A, Kollist H, Zielenkiewicz P, Tiuryn J, Siedlecki P, Swiezewski S, Ginalski K, Koblowska M, Archacki R, Wilczynski B, Rapacz M, Jerzmanowski A.

Plant Physiol. 2015 Nov;169(3):2080-101. doi: 10.1104/pp.15.00493. Epub 2015 Sep 8.

2.

GWAMAR: genome-wide assessment of mutations associated with drug resistance in bacteria.

Wozniak M, Tiuryn J, Wong L.

BMC Genomics. 2014;15 Suppl 10:S10. doi: 10.1186/1471-2164-15-S10-S10. Epub 2014 Dec 12.

3.

TACO: a general-purpose tool for predicting cell-type-specific transcription factor dimers.

Jankowski A, Prabhakar S, Tiuryn J.

BMC Genomics. 2014 Mar 19;15:208. doi: 10.1186/1471-2164-15-208.

4.

eCAMBer: efficient support for large-scale comparative analysis of multiple bacterial strains.

Wozniak M, Wong L, Tiuryn J.

BMC Bioinformatics. 2014 Mar 5;15:65. doi: 10.1186/1471-2105-15-65.

5.

A probabilistic model of neutral and selective dynamics of protein network evolution.

Dutkowski J, Tiuryn J.

J Comput Biol. 2013 Sep;20(9):631-42. doi: 10.1089/cmb.2012.0295. Epub 2013 Aug 9.

6.

Unrooted tree reconciliation: a unified approach.

Górecki P, Eulenstein O, Tiuryn J.

IEEE/ACM Trans Comput Biol Bioinform. 2013 Mar-Apr;10(2):522-36. doi: 10.1109/TCBB.2013.22.

PMID:
23929875
7.

Bioinformatics and computational biology in Poland.

Bujnicki JM, Tiuryn J.

PLoS Comput Biol. 2013;9(5):e1003048. doi: 10.1371/journal.pcbi.1003048. Epub 2013 May 2. No abstract available.

8.

Comprehensive prediction in 78 human cell lines reveals rigidity and compactness of transcription factor dimers.

Jankowski A, Szczurek E, Jauch R, Tiuryn J, Prabhakar S.

Genome Res. 2013 Aug;23(8):1307-18. doi: 10.1101/gr.154922.113. Epub 2013 Apr 3.

9.

An approach to identifying drug resistance associated mutations in bacterial strains.

Wozniak M, Tiuryn J, Wong L.

BMC Genomics. 2012;13 Suppl 7:S23. doi: 10.1186/1471-2164-13-S7-S23. Epub 2012 Dec 13.

10.

CAMBer: an approach to support comparative analysis of multiple bacterial strains.

Wozniak M, Wong L, Tiuryn J.

BMC Genomics. 2011;12 Suppl 2:S6. doi: 10.1186/1471-2164-12-S2-S6. Epub 2011 Jul 27.

11.

CAMBerVis: visualization software to support comparative analysis of multiple bacterial strains.

Woźniak M, Wong L, Tiuryn J.

Bioinformatics. 2011 Dec 1;27(23):3313-4. doi: 10.1093/bioinformatics/btr561. Epub 2011 Oct 8.

12.

Rhythmic diel pattern of gene expression in juvenile maize leaf.

Jończyk M, Sobkowiak A, Siedlecki P, Biecek P, Trzcinska-Danielewicz J, Tiuryn J, Fronk J, Sowiński P.

PLoS One. 2011;6(8):e23628. doi: 10.1371/journal.pone.0023628. Epub 2011 Aug 17.

13.

Deregulation upon DNA damage revealed by joint analysis of context-specific perturbation data.

Szczurek E, Markowetz F, Gat-Viks I, Biecek P, Tiuryn J, Vingron M.

BMC Bioinformatics. 2011 Jun 21;12:249. doi: 10.1186/1471-2105-12-249.

14.

Bi-billboard: symmetrization and careful choice of informant species results in higher accuracy of regulatory element prediction.

Dojer N, Biecek P, Tiuryn J.

J Comput Biol. 2011 Jun;18(6):809-19. doi: 10.1089/cmb.2010.0299. Epub 2011 May 12.

PMID:
21563976
15.

Introducing knowledge into differential expression analysis.

Szczurek E, Biecek P, Tiuryn J, Vingron M.

J Comput Biol. 2010 Aug;17(8):953-67. doi: 10.1089/cmb.2010.0034.

16.

MODEVO: exploring modularity and evolution of protein interaction networks.

Woźniak M, Tiuryn J, Dutkowski J.

Bioinformatics. 2010 Jul 15;26(14):1790-1. doi: 10.1093/bioinformatics/btq274. Epub 2010 May 27.

17.

Phylogeny-guided interaction mapping in seven eukaryotes.

Dutkowski J, Tiuryn J.

BMC Bioinformatics. 2009 Nov 30;10:393. doi: 10.1186/1471-2105-10-393.

18.

Elucidating regulatory mechanisms downstream of a signaling pathway using informative experiments.

Szczurek E, Gat-Viks I, Tiuryn J, Vingron M.

Mol Syst Biol. 2009;5:287. doi: 10.1038/msb.2009.45. Epub 2009 Jul 7.

19.

Finding evolutionarily conserved cis-regulatory modules with a universal set of motifs.

Wilczynski B, Dojer N, Patelak M, Tiuryn J.

BMC Bioinformatics. 2009 Mar 10;10:82. doi: 10.1186/1471-2105-10-82.

20.

Identification of functional modules from conserved ancestral protein-protein interactions.

Dutkowski J, Tiuryn J.

Bioinformatics. 2007 Jul 1;23(13):i149-58.

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