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Results: 1 to 20 of 30

1.

TACO: a general-purpose tool for predicting cell-type-specific transcription factor dimers.

Jankowski A, Prabhakar S, Tiuryn J.

BMC Genomics. 2014 Mar 19;15:208. doi: 10.1186/1471-2164-15-208.

PMID:
24640962
[PubMed - in process]
Free PMC Article
2.

eCAMBer: efficient support for large-scale comparative analysis of multiple bacterial strains.

Wozniak M, Wong L, Tiuryn J.

BMC Bioinformatics. 2014 Mar 5;15:65. doi: 10.1186/1471-2105-15-65.

PMID:
24597904
[PubMed - in process]
Free PMC Article
3.

A probabilistic model of neutral and selective dynamics of protein network evolution.

Dutkowski J, Tiuryn J.

J Comput Biol. 2013 Sep;20(9):631-42. doi: 10.1089/cmb.2012.0295. Epub 2013 Aug 9.

PMID:
23931333
[PubMed - indexed for MEDLINE]
4.

Unrooted tree reconciliation: a unified approach.

Górecki P, Eulenstein O, Tiuryn J.

IEEE/ACM Trans Comput Biol Bioinform. 2013 Mar-Apr;10(2):522-36. doi: 10.1109/TCBB.2013.22.

PMID:
23929875
[PubMed - indexed for MEDLINE]
5.

Bioinformatics and computational biology in Poland.

Bujnicki JM, Tiuryn J.

PLoS Comput Biol. 2013;9(5):e1003048. doi: 10.1371/journal.pcbi.1003048. Epub 2013 May 2. No abstract available.

PMID:
23658507
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Comprehensive prediction in 78 human cell lines reveals rigidity and compactness of transcription factor dimers.

Jankowski A, Szczurek E, Jauch R, Tiuryn J, Prabhakar S.

Genome Res. 2013 Aug;23(8):1307-18. doi: 10.1101/gr.154922.113. Epub 2013 Apr 3.

PMID:
23554463
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Unrooted Tree Reconciliation: A Unified Approach.

Gorecki P, Eulenstein O, Tiuryn J.

IEEE/ACM Trans Comput Biol Bioinform. 2013 Mar 19. [Epub ahead of print]

PMID:
23530088
[PubMed - as supplied by publisher]
8.

An approach to identifying drug resistance associated mutations in bacterial strains.

Wozniak M, Tiuryn J, Wong L.

BMC Genomics. 2012;13 Suppl 7:S23. doi: 10.1186/1471-2164-13-S7-S23. Epub 2012 Dec 13.

PMID:
23281931
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

CAMBer: an approach to support comparative analysis of multiple bacterial strains.

Wozniak M, Wong L, Tiuryn J.

BMC Genomics. 2011;12 Suppl 2:S6. doi: 10.1186/1471-2164-12-S2-S6. Epub 2011 Jul 27.

PMID:
21989220
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

CAMBerVis: visualization software to support comparative analysis of multiple bacterial strains.

Woźniak M, Wong L, Tiuryn J.

Bioinformatics. 2011 Dec 1;27(23):3313-4. doi: 10.1093/bioinformatics/btr561. Epub 2011 Oct 8.

PMID:
21984770
[PubMed - indexed for MEDLINE]
Free Article
11.

Rhythmic diel pattern of gene expression in juvenile maize leaf.

Jończyk M, Sobkowiak A, Siedlecki P, Biecek P, Trzcinska-Danielewicz J, Tiuryn J, Fronk J, Sowiński P.

PLoS One. 2011;6(8):e23628. doi: 10.1371/journal.pone.0023628. Epub 2011 Aug 17.

PMID:
21858187
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Deregulation upon DNA damage revealed by joint analysis of context-specific perturbation data.

Szczurek E, Markowetz F, Gat-Viks I, Biecek P, Tiuryn J, Vingron M.

BMC Bioinformatics. 2011 Jun 21;12:249. doi: 10.1186/1471-2105-12-249.

PMID:
21693013
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Bi-billboard: symmetrization and careful choice of informant species results in higher accuracy of regulatory element prediction.

Dojer N, Biecek P, Tiuryn J.

J Comput Biol. 2011 Jun;18(6):809-19. doi: 10.1089/cmb.2010.0299. Epub 2011 May 12.

PMID:
21563976
[PubMed - indexed for MEDLINE]
14.

Introducing knowledge into differential expression analysis.

Szczurek E, Biecek P, Tiuryn J, Vingron M.

J Comput Biol. 2010 Aug;17(8):953-67. doi: 10.1089/cmb.2010.0034.

PMID:
20726790
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

MODEVO: exploring modularity and evolution of protein interaction networks.

Woźniak M, Tiuryn J, Dutkowski J.

Bioinformatics. 2010 Jul 15;26(14):1790-1. doi: 10.1093/bioinformatics/btq274. Epub 2010 May 27.

PMID:
20507893
[PubMed - indexed for MEDLINE]
Free Article
16.

Phylogeny-guided interaction mapping in seven eukaryotes.

Dutkowski J, Tiuryn J.

BMC Bioinformatics. 2009 Nov 30;10:393. doi: 10.1186/1471-2105-10-393.

PMID:
19948065
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Elucidating regulatory mechanisms downstream of a signaling pathway using informative experiments.

Szczurek E, Gat-Viks I, Tiuryn J, Vingron M.

Mol Syst Biol. 2009;5:287. doi: 10.1038/msb.2009.45. Epub 2009 Jul 7.

PMID:
19584836
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Finding evolutionarily conserved cis-regulatory modules with a universal set of motifs.

Wilczynski B, Dojer N, Patelak M, Tiuryn J.

BMC Bioinformatics. 2009 Mar 10;10:82. doi: 10.1186/1471-2105-10-82.

PMID:
19284541
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Identification of functional modules from conserved ancestral protein-protein interactions.

Dutkowski J, Tiuryn J.

Bioinformatics. 2007 Jul 1;23(13):i149-58.

PMID:
17646291
[PubMed - indexed for MEDLINE]
Free Article
20.

Library of local descriptors models the core of proteins accurately.

Drabikowski M, Nowakowski S, Tiuryn J.

Proteins. 2007 Nov 15;69(3):499-510.

PMID:
17623841
[PubMed - indexed for MEDLINE]

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