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Results: 17


Draft Genome Sequences of Histamine-Producing Photobacterium kishitanii and Photobacterium angustum, Isolated from Albacore (Thunnus alalunga) and Yellowfin (Thunnus albacares) Tuna.

Bjornsdottir-Butler K, McCarthy SA, Dunlap PV, Timme RE, Benner RA Jr.

Genome Announc. 2015 Apr 30;3(2). pii: e00400-15. doi: 10.1128/genomeA.00400-15.


Genome-wide methylation patterns in Salmonella enterica Subsp. enterica Serovars.

Pirone-Davies C, Hoffmann M, Roberts RJ, Muruvanda T, Timme RE, Strain E, Luo Y, Payne J, Luong K, Song Y, Tsai YC, Boitano M, Clark TA, Korlach J, Evans PS, Allard MW.

PLoS One. 2015 Apr 10;10(4):e0123639. doi: 10.1371/journal.pone.0123639. eCollection 2015.


Characterization and evolution of Salmonella CRISPR-Cas systems.

Shariat N, Timme RE, Pettengill JB, Barrangou R, Dudley EG.

Microbiology. 2015 Feb;161(Pt 2):374-86. doi: 10.1099/mic.0.000005. Epub 2014 Dec 5.


The evolutionary history and diagnostic utility of the CRISPR-Cas system within Salmonella enterica ssp. enterica.

Pettengill JB, Timme RE, Barrangou R, Toro M, Allard MW, Strain E, Musser SM, Brown EW.

PeerJ. 2014 Apr 17;2:e340. doi: 10.7717/peerj.340. eCollection 2014.


Phylogenetic diversity of the enteric pathogen Salmonella enterica subsp. enterica inferred from genome-wide reference-free SNP characters.

Timme RE, Pettengill JB, Allard MW, Strain E, Barrangou R, Wehnes C, Van Kessel JS, Karns JS, Musser SM, Brown EW.

Genome Biol Evol. 2013;5(11):2109-23. doi: 10.1093/gbe/evt159.


Development of a locked nucleic acid real-time polymerase chain reaction assay for the detection of Pinus armandii in mixed species pine nut samples associated with dysgeusia.

Handy SM, Timme RE, Jacob SM, Deeds JR.

J Agric Food Chem. 2013 Feb 6;61(5):1060-6. doi: 10.1021/jf304223a. Epub 2013 Jan 23.


Erratum: Multigene phylogeny of the green lineage reveals the origin and diversification of land plants.

Finet C, Timme RE, Delwiche CF, Marletaz F.

Curr Biol. 2012 Aug 7;22(15):1456-7. No abstract available.


Draft genome sequences of 21 Salmonella enterica serovar enteritidis strains.

Timme RE, Allard MW, Luo Y, Strain E, Pettengill J, Wang C, Li C, Keys CE, Zheng J, Stones R, Wilson MR, Musser SM, Brown EW.

J Bacteriol. 2012 Nov;194(21):5994-5. doi: 10.1128/JB.01289-12.


Origin of strigolactones in the green lineage.

Delaux PM, Xie X, Timme RE, Puech-Pages V, Dunand C, Lecompte E, Delwiche CF, Yoneyama K, Bécard G, Séjalon-Delmas N.

New Phytol. 2012 Sep;195(4):857-71. doi: 10.1111/j.1469-8137.2012.04209.x. Epub 2012 Jun 27.


Broad phylogenomic sampling and the sister lineage of land plants.

Timme RE, Bachvaroff TR, Delwiche CF.

PLoS One. 2012;7(1):e29696. doi: 10.1371/journal.pone.0029696. Epub 2012 Jan 13.



Delwiche CF, Timme RE.

Curr Biol. 2011 Jun 7;21(11):R417-22. doi: 10.1016/j.cub.2011.04.021. Review. No abstract available.


Multigene phylogeny of the green lineage reveals the origin and diversification of land plants.

Finet C, Timme RE, Delwiche CF, Marlétaz F.

Curr Biol. 2010 Dec 21;20(24):2217-22. doi: 10.1016/j.cub.2010.11.035. Epub 2010 Dec 9. Erratum in: Curr Biol. 2012 Aug 7;22(15):1456-7.


Unraveling the evolution of auxin signaling.

De Smet I, Voss U, Lau S, Wilson M, Shao N, Timme RE, Swarup R, Kerr I, Hodgman C, Bock R, Bennett M, Jürgens G, Beeckman T.

Plant Physiol. 2011 Jan;155(1):209-21. doi: 10.1104/pp.110.168161. Epub 2010 Nov 16.


High-resolution phylogeny for Helianthus (Asteraceae) using the 18S-26S ribosomal DNA external transcribed spacer.

Timme RE, Simpson BB, Linder CR.

Am J Bot. 2007 Nov;94(11):1837-52. doi: 10.3732/ajb.94.11.1837.


Using MoBIoS' scalable genome join to find conserved primer pair candidates between two genomes.

Xu W, Briggs WJ, Padolina J, Timme RE, Liu W, Linder CR, Miranker DP.

Bioinformatics. 2004 Aug 4;20 Suppl 1:i355-62.

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