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Results: 10

1.

GABPα Binding to Overlapping ETS and CRE DNA Motifs Is Enhanced by CREB1: Custom DNA Microarrays.

He X, Syed KS, Tillo D, Mann I, Weirauch MT, Vinson C.

G3 (Bethesda). 2015 Jul 16. pii: g3.115.020248. doi: 10.1534/g3.115.020248. [Epub ahead of print]

2.

Nucleosomes are enriched at the boundaries of hypomethylated regions (HMRs) in mouse dermal fibroblasts and keratinocytes.

He X, Chatterjee R, Tillo D, Smith A, FitzGerald P, Vinson C.

Epigenetics Chromatin. 2014 Dec 2;7(1):34. doi: 10.1186/1756-8935-7-34. eCollection 2014.

3.

Nucleosome maps of the human cytomegalovirus genome reveal a temporal switch in chromatin organization linked to a major IE protein.

Zalckvar E, Paulus C, Tillo D, Asbach-Nitzsche A, Lubling Y, Winterling C, Strieder N, Mücke K, Goodrum F, Segal E, Nevels M.

Proc Natl Acad Sci U S A. 2013 Aug 6;110(32):13126-31. doi: 10.1073/pnas.1305548110. Epub 2013 Jul 22.

4.

Nucleosome sequence preferences influence in vivo nucleosome organization.

Kaplan N, Moore I, Fondufe-Mittendorf Y, Gossett AJ, Tillo D, Field Y, Hughes TR, Lieb JD, Widom J, Segal E.

Nat Struct Mol Biol. 2010 Aug;17(8):918-20; author reply 920-2. doi: 10.1038/nsmb0810-918. No abstract available.

5.

High nucleosome occupancy is encoded at human regulatory sequences.

Tillo D, Kaplan N, Moore IK, Fondufe-Mittendorf Y, Gossett AJ, Field Y, Lieb JD, Widom J, Segal E, Hughes TR.

PLoS One. 2010 Feb 9;5(2):e9129. doi: 10.1371/journal.pone.0009129.

6.

G+C content dominates intrinsic nucleosome occupancy.

Tillo D, Hughes TR.

BMC Bioinformatics. 2009 Dec 22;10:442. doi: 10.1186/1471-2105-10-442.

7.

A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters.

Badis G, Chan ET, van Bakel H, Pena-Castillo L, Tillo D, Tsui K, Carlson CD, Gossett AJ, Hasinoff MJ, Warren CL, Gebbia M, Talukder S, Yang A, Mnaimneh S, Terterov D, Coburn D, Li Yeo A, Yeo ZX, Clarke ND, Lieb JD, Ansari AZ, Nislow C, Hughes TR.

Mol Cell. 2008 Dec 26;32(6):878-87. doi: 10.1016/j.molcel.2008.11.020.

8.

The DNA-encoded nucleosome organization of a eukaryotic genome.

Kaplan N, Moore IK, Fondufe-Mittendorf Y, Gossett AJ, Tillo D, Field Y, LeProust EM, Hughes TR, Lieb JD, Widom J, Segal E.

Nature. 2009 Mar 19;458(7236):362-6. doi: 10.1038/nature07667. Epub 2008 Dec 17.

9.

A high-resolution atlas of nucleosome occupancy in yeast.

Lee W, Tillo D, Bray N, Morse RH, Davis RW, Hughes TR, Nislow C.

Nat Genet. 2007 Oct;39(10):1235-44. Epub 2007 Sep 16.

PMID:
17873876
10.

Codep: maximizing co-evolutionary interdependencies to discover interacting proteins.

Tillier ER, Biro L, Li G, Tillo D.

Proteins. 2006 Jun 1;63(4):822-31.

PMID:
16634043
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