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Results: 12

1.

Increasing coverage of transcription factor position weight matrices through domain-level homology.

Bernard B, Thorsson V, Rovira H, Shmulevich I.

PLoS One. 2012;7(8):e42779. doi: 10.1371/journal.pone.0042779. Epub 2012 Aug 27.

2.

A data integration framework for prediction of transcription factor targets.

Nykter M, Lähdesmäki H, Rust A, Thorsson V, Shmulevich I.

Ann N Y Acad Sci. 2009 Mar;1158:205-14. doi: 10.1111/j.1749-6632.2008.03758.x.

3.

Identification of tuberculosis susceptibility genes with human macrophage gene expression profiles.

Thuong NT, Dunstan SJ, Chau TT, Thorsson V, Simmons CP, Quyen NT, Thwaites GE, Thi Ngoc Lan N, Hibberd M, Teo YY, Seielstad M, Aderem A, Farrar JJ, Hawn TR.

PLoS Pathog. 2008 Dec;4(12):e1000229. doi: 10.1371/journal.ppat.1000229. Epub 2008 Dec 5.

4.

Uncovering a macrophage transcriptional program by integrating evidence from motif scanning and expression dynamics.

Ramsey SA, Klemm SL, Zak DE, Kennedy KA, Thorsson V, Li B, Gilchrist M, Gold ES, Johnson CD, Litvak V, Navarro G, Roach JC, Rosenberger CM, Rust AG, Yudkovsky N, Aderem A, Shmulevich I.

PLoS Comput Biol. 2008 Mar 21;4(3):e1000021. doi: 10.1371/journal.pcbi.1000021. Erratum in: PLoS Comput Biol. 2008 Mar;4(3). doi: 10.1371/annotation/e14ad837-e5ff-4bd5-a5f2-f32e784d75a2. PLoS Comput Biol. 2008 Mar;4(3). doi: 10.1371/annotation/1c55be5f-ecd7-49be-91c1-91881be60297.

5.

The Innate Immune Database (IIDB).

Korb M, Rust AG, Thorsson V, Battail C, Li B, Hwang D, Kennedy KA, Roach JC, Rosenberger CM, Gilchrist M, Zak D, Johnson C, Marzolf B, Aderem A, Shmulevich I, Bolouri H.

BMC Immunol. 2008 Mar 5;9:7. doi: 10.1186/1471-2172-9-7.

6.

Prediction of phenotype and gene expression for combinations of mutations.

Carter GW, Prinz S, Neou C, Shelby JP, Marzolf B, Thorsson V, Galitski T.

Mol Syst Biol. 2007;3:96. Epub 2007 Mar 27.

7.

The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo.

Bonneau R, Reiss DJ, Shannon P, Facciotti M, Hood L, Baliga NS, Thorsson V.

Genome Biol. 2006;7(5):R36. Epub 2006 May 10.

8.

Transcriptional noise and cellular heterogeneity in mammalian macrophages.

Ramsey S, Ozinsky A, Clark A, Smith KD, de Atauri P, Thorsson V, Orrell D, Bolouri H.

Philos Trans R Soc Lond B Biol Sci. 2006 Mar 29;361(1467):495-506. Review.

9.

Tools enabling the elucidation of molecular pathways active in human disease: application to Hepatitis C virus infection.

Reiss DJ, Avila-Campillo I, Thorsson V, Schwikowski B, Galitski T.

BMC Bioinformatics. 2005 Jun 20;6:154.

10.

Derivation of genetic interaction networks from quantitative phenotype data.

Drees BL, Thorsson V, Carter GW, Rives AW, Raymond MZ, Avila-Campillo I, Shannon P, Galitski T.

Genome Biol. 2005;6(4):R38. Epub 2005 Mar 31.

11.

Genome sequence of Halobacterium species NRC-1.

Ng WV, Kennedy SP, Mahairas GG, Berquist B, Pan M, Shukla HD, Lasky SR, Baliga NS, Thorsson V, Sbrogna J, Swartzell S, Weir D, Hall J, Dahl TA, Welti R, Goo YA, Leithauser B, Keller K, Cruz R, Danson MJ, Hough DW, Maddocks DG, Jablonski PE, Krebs MP, Angevine CM, Dale H, Isenbarger TA, Peck RF, Pohlschroder M, Spudich JL, Jung KW, Alam M, Freitas T, Hou S, Daniels CJ, Dennis PP, Omer AD, Ebhardt H, Lowe TM, Liang P, Riley M, Hood L, DasSarma S.

Proc Natl Acad Sci U S A. 2000 Oct 24;97(22):12176-81.

12.

Parking strategies for genome sequencing.

Roach JC, Thorsson V, Siegel AF.

Genome Res. 2000 Jul;10(7):1020-30.

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