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Results: 1 to 20 of 38

1.

A time-calibrated phylogeny of the butterfly tribe Melitaeini.

Long EC, Thomson RC, Shapiro AM.

Mol Phylogenet Evol. 2014 Jun 18;79C:69-81. doi: 10.1016/j.ympev.2014.06.010. [Epub ahead of print]

PMID:
24952320
[PubMed - as supplied by publisher]
2.

Multilocus phylogeny of the New-World mud turtles (Kinosternidae) supports the traditional classification of the group.

Spinks PQ, Thomson RC, GidiƟ M, Bradley Shaffer H.

Mol Phylogenet Evol. 2014 Jul;76:254-60. doi: 10.1016/j.ympev.2014.03.025. Epub 2014 Apr 2.

PMID:
24704303
[PubMed - in process]
3.

The advantages of going large: genome-wide SNPs clarify the complex population history and systematics of the threatened western pond turtle.

Spinks PQ, Thomson RC, Shaffer HB.

Mol Ecol. 2014 May;23(9):2228-41. doi: 10.1111/mec.12736. Epub 2014 Apr 18.

PMID:
24673803
[PubMed - in process]
4.

Misleading phylogenetic inferences based on single-exemplar sampling in the turtle genus Pseudemys.

Spinks PQ, Thomson RC, Pauly GB, Newman CE, Mount G, Shaffer HB.

Mol Phylogenet Evol. 2013 Aug;68(2):269-81. doi: 10.1016/j.ympev.2013.03.031. Epub 2013 Apr 12.

PMID:
23583419
[PubMed - in process]
5.

The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage.

Shaffer HB, Minx P, Warren DE, Shedlock AM, Thomson RC, Valenzuela N, Abramyan J, Amemiya CT, Badenhorst D, Biggar KK, Borchert GM, Botka CW, Bowden RM, Braun EL, Bronikowski AM, Bruneau BG, Buck LT, Capel B, Castoe TA, Czerwinski M, Delehaunty KD, Edwards SV, Fronick CC, Fujita MK, Fulton L, Graves TA, Green RE, Haerty W, Hariharan R, Hernandez O, Hillier LW, Holloway AK, Janes D, Janzen FJ, Kandoth C, Kong L, de Koning AJ, Li Y, Literman R, McGaugh SE, Mork L, O'Laughlin M, Paitz RT, Pollock DD, Ponting CP, Radhakrishnan S, Raney BJ, Richman JM, St John J, Schwartz T, Sethuraman A, Spinks PQ, Storey KB, Thane N, Vinar T, Zimmerman LM, Warren WC, Mardis ER, Wilson RK.

Genome Biol. 2013 Mar 28;14(3):R28. [Epub ahead of print]

PMID:
23537068
[PubMed - as supplied by publisher]
Free PMC Article
6.

Species boundaries and phylogenetic relationships in the critically endangered Asian box turtle genus Cuora.

Spinks PQ, Thomson RC, Zhang Y, Che J, Wu Y, Shaffer HB.

Mol Phylogenet Evol. 2012 Jun;63(3):656-67.

PMID:
22649793
[PubMed - indexed for MEDLINE]
7.

The use of combined three-dimensional electron backscatter diffraction and energy dispersive X-ray analysis to assess the characteristics of the gamma/gamma-prime microstructure in alloy 720Li.

Child DJ, West GD, Thomson RC.

Ultramicroscopy. 2012 Mar;114:1-10. doi: 10.1016/j.ultramic.2011.11.003. Epub 2011 Nov 22.

PMID:
22343666
[PubMed]
8.

Biomechanical trade-offs bias rates of evolution in the feeding apparatus of fishes.

Holzman R, Collar DC, Price SA, Hulsey CD, Thomson RC, Wainwright PC.

Proc Biol Sci. 2012 Apr 7;279(1732):1287-92. doi: 10.1098/rspb.2011.1838. Epub 2011 Oct 12.

PMID:
21993506
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Sparse supermatrices for phylogenetic inference: taxonomy, alignment, rogue taxa, and the phylogeny of living turtles.

Thomson RC, Shaffer HB.

Syst Biol. 2010 Jan;59(1):42-58. doi: 10.1093/sysbio/syp075. Epub 2009 Nov 11.

PMID:
20525619
[PubMed - indexed for MEDLINE]
10.

Genome-enabled development of DNA markers for ecology, evolution and conservation.

Thomson RC, Wang IJ, Johnson JR.

Mol Ecol. 2010 Jun;19(11):2184-95. doi: 10.1111/j.1365-294X.2010.04650.x. Epub 2010 May 10. Review.

PMID:
20465588
[PubMed - indexed for MEDLINE]
11.

Rapid progress on the vertebrate tree of life.

Thomson RC, Shaffer HB.

BMC Biol. 2010 Mar 8;8:19. doi: 10.1186/1741-7007-8-19.

PMID:
20211001
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Nuclear gene phylogeography reveals the historical legacy of an ancient inland sea on lineages of the western pond turtle, Emys marmorata in California.

Spinks PQ, Thomson RC, Shaffer HB.

Mol Ecol. 2010 Feb;19(3):542-56. doi: 10.1111/j.1365-294X.2009.04451.x. Epub 2009 Dec 30.

PMID:
20051011
[PubMed - indexed for MEDLINE]
13.

Fourteen nuclear genes provide phylogenetic resolution for difficult nodes in the turtle tree of life.

Barley AJ, Spinks PQ, Thomson RC, Shaffer HB.

Mol Phylogenet Evol. 2010 Jun;55(3):1189-94. doi: 10.1016/j.ympev.2009.11.005. Epub 2009 Nov 12.

PMID:
19913628
[PubMed - indexed for MEDLINE]
14.

PhyLIS: a simple GNU/Linux distribution for phylogenetics and phyloinformatics.

Thomson RC.

Evol Bioinform Online. 2009 Jul 30;5:91-5.

PMID:
19812729
[PubMed]
Free PMC Article
15.

Assessing what is needed to resolve a molecular phylogeny: simulations and empirical data from emydid turtles.

Spinks PQ, Thomson RC, Lovely GA, Shaffer HB.

BMC Evol Biol. 2009 Mar 12;9:56. doi: 10.1186/1471-2148-9-56.

PMID:
19284630
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Combined EBSD/EDS tomography in a dual-beam FIB/FEG-SEM.

West GD, Thomson RC.

J Microsc. 2009 Mar;233(3):442-50. doi: 10.1111/j.1365-2818.2009.03138.x.

PMID:
19250465
[PubMed]
17.

Developing markers for multilocus phylogenetics in non-model organisms: A test case with turtles.

Thomson RC, Shedlock AM, Edwards SV, Shaffer HB.

Mol Phylogenet Evol. 2008 Nov;49(2):514-25. doi: 10.1016/j.ympev.2008.08.006. Epub 2008 Aug 12.

PMID:
18761096
[PubMed - indexed for MEDLINE]
18.

Expansion and activation of NK cell populations in a gammaherpesvirus infection.

Thomson RC, Petrik J, Nash AA, Dutia BM.

Scand J Immunol. 2008 May;67(5):489-95. doi: 10.1111/j.1365-3083.2008.02100.x. Epub 2008 Mar 18.

PMID:
18363592
[PubMed - indexed for MEDLINE]
19.

Delimiting species in recent radiations.

Shaffer HB, Thomson RC.

Syst Biol. 2007 Dec;56(6):896-906.

PMID:
18066926
[PubMed - indexed for MEDLINE]
20.

Microstructural characterization of autogenous laser welds on 316L stainless steel using EBSD and EDS.

Kell J, Tyrer JR, Higginson RL, Thomson RC.

J Microsc. 2005 Feb;217(Pt 2):167-73.

PMID:
15683414
[PubMed - indexed for MEDLINE]

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