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Items: 1 to 20 of 42

1.

Phylogeny and temporal diversification of the New World pond turtles (Emydidae).

Spinks PQ, Thomson RC, McCartney-Melstad E, Shaffer HB.

Mol Phylogenet Evol. 2016 Jul 9;103:85-97. doi: 10.1016/j.ympev.2016.07.007. [Epub ahead of print]

PMID:
27400630
2.

Assessing the performance of DNA barcoding using posterior predictive simulations.

Barley AJ, Thomson RC.

Mol Ecol. 2016 May;25(9):1944-57. doi: 10.1111/mec.13590. Epub 2016 Mar 28.

PMID:
26915049
3.

Sun skink landscape genomics: assessing the roles of micro-evolutionary processes in shaping genetic and phenotypic diversity across a heterogeneous and fragmented landscape.

Barley AJ, Monnahan PJ, Thomson RC, Grismer LL, Brown RM.

Mol Ecol. 2015 Apr;24(8):1696-712. doi: 10.1111/mec.13151. Epub 2015 Apr 6.

PMID:
25763872
4.

A critical appraisal of the use of microRNA data in phylogenetics.

Thomson RC, Plachetzki DC, Mahler DL, Moore BR.

Proc Natl Acad Sci U S A. 2014 Sep 2;111(35):E3659-68. doi: 10.1073/pnas.1407207111. Epub 2014 Jul 28.

5.

A time-calibrated phylogeny of the butterfly tribe Melitaeini.

Long EC, Thomson RC, Shapiro AM.

Mol Phylogenet Evol. 2014 Oct;79:69-81. doi: 10.1016/j.ympev.2014.06.010. Epub 2014 Jun 18.

PMID:
24952320
6.

Multilocus phylogeny of the New-World mud turtles (Kinosternidae) supports the traditional classification of the group.

Spinks PQ, Thomson RC, GidiƟ M, Bradley Shaffer H.

Mol Phylogenet Evol. 2014 Jul;76:254-60. doi: 10.1016/j.ympev.2014.03.025. Epub 2014 Apr 2.

PMID:
24704303
7.

The advantages of going large: genome-wide SNPs clarify the complex population history and systematics of the threatened western pond turtle.

Spinks PQ, Thomson RC, Shaffer HB.

Mol Ecol. 2014 May;23(9):2228-41. doi: 10.1111/mec.12736. Epub 2014 Apr 18.

PMID:
24673803
8.

Misleading phylogenetic inferences based on single-exemplar sampling in the turtle genus Pseudemys.

Spinks PQ, Thomson RC, Pauly GB, Newman CE, Mount G, Shaffer HB.

Mol Phylogenet Evol. 2013 Aug;68(2):269-81. doi: 10.1016/j.ympev.2013.03.031. Epub 2013 Apr 12.

PMID:
23583419
9.

The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage.

Shaffer HB, Minx P, Warren DE, Shedlock AM, Thomson RC, Valenzuela N, Abramyan J, Amemiya CT, Badenhorst D, Biggar KK, Borchert GM, Botka CW, Bowden RM, Braun EL, Bronikowski AM, Bruneau BG, Buck LT, Capel B, Castoe TA, Czerwinski M, Delehaunty KD, Edwards SV, Fronick CC, Fujita MK, Fulton L, Graves TA, Green RE, Haerty W, Hariharan R, Hernandez O, Hillier LW, Holloway AK, Janes D, Janzen FJ, Kandoth C, Kong L, de Koning AP, Li Y, Literman R, McGaugh SE, Mork L, O'Laughlin M, Paitz RT, Pollock DD, Ponting CP, Radhakrishnan S, Raney BJ, Richman JM, St John J, Schwartz T, Sethuraman A, Spinks PQ, Storey KB, Thane N, Vinar T, Zimmerman LM, Warren WC, Mardis ER, Wilson RK.

Genome Biol. 2013 Mar 28;14(3):R28. doi: 10.1186/gb-2013-14-3-r28.

10.

Species boundaries and phylogenetic relationships in the critically endangered Asian box turtle genus Cuora.

Spinks PQ, Thomson RC, Zhang Y, Che J, Wu Y, Shaffer HB.

Mol Phylogenet Evol. 2012 Jun;63(3):656-67.

PMID:
22649793
11.
12.

Biomechanical trade-offs bias rates of evolution in the feeding apparatus of fishes.

Holzman R, Collar DC, Price SA, Hulsey CD, Thomson RC, Wainwright PC.

Proc Biol Sci. 2012 Apr 7;279(1732):1287-92. doi: 10.1098/rspb.2011.1838. Epub 2011 Oct 12.

13.

Sparse supermatrices for phylogenetic inference: taxonomy, alignment, rogue taxa, and the phylogeny of living turtles.

Thomson RC, Shaffer HB.

Syst Biol. 2010 Jan;59(1):42-58. doi: 10.1093/sysbio/syp075. Epub 2009 Nov 11.

PMID:
20525619
14.

Genome-enabled development of DNA markers for ecology, evolution and conservation.

Thomson RC, Wang IJ, Johnson JR.

Mol Ecol. 2010 Jun;19(11):2184-95. doi: 10.1111/j.1365-294X.2010.04650.x. Epub 2010 May 10. Review.

PMID:
20465588
15.

Rapid progress on the vertebrate tree of life.

Thomson RC, Shaffer HB.

BMC Biol. 2010 Mar 8;8:19. doi: 10.1186/1741-7007-8-19.

16.

Nuclear gene phylogeography reveals the historical legacy of an ancient inland sea on lineages of the western pond turtle, Emys marmorata in California.

Spinks PQ, Thomson RC, Shaffer HB.

Mol Ecol. 2010 Feb;19(3):542-56. doi: 10.1111/j.1365-294X.2009.04451.x. Epub 2009 Dec 30.

PMID:
20051011
17.

Fourteen nuclear genes provide phylogenetic resolution for difficult nodes in the turtle tree of life.

Barley AJ, Spinks PQ, Thomson RC, Shaffer HB.

Mol Phylogenet Evol. 2010 Jun;55(3):1189-94. doi: 10.1016/j.ympev.2009.11.005. Epub 2009 Nov 12.

PMID:
19913628
18.
19.

Assessing what is needed to resolve a molecular phylogeny: simulations and empirical data from emydid turtles.

Spinks PQ, Thomson RC, Lovely GA, Shaffer HB.

BMC Evol Biol. 2009 Mar 12;9:56. doi: 10.1186/1471-2148-9-56.

20.

Combined EBSD/EDS tomography in a dual-beam FIB/FEG-SEM.

West GD, Thomson RC.

J Microsc. 2009 Mar;233(3):442-50. doi: 10.1111/j.1365-2818.2009.03138.x.

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