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Results: 1 to 20 of 38

1.

Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling.

Hug LA, Castelle CJ, Wrighton KC, Thomas BC, Sharon I, Frischkorn KR, Williams KH, Tringe SG, Banfield JF.

Microbiome. 2013 Aug 5;1(1):22. doi: 10.1186/2049-2618-1-22.

PMID:
24450983
[PubMed]
Free PMC Article
2.

Small genomes and sparse metabolisms of sediment-associated bacteria from four candidate phyla.

Kantor RS, Wrighton KC, Handley KM, Sharon I, Hug LA, Castelle CJ, Thomas BC, Banfield JF.

MBio. 2013 Oct 22;4(5):e00708-13. doi: 10.1128/mBio.00708-13.

PMID:
24149512
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria.

Di Rienzi SC, Sharon I, Wrighton KC, Koren O, Hug LA, Thomas BC, Goodrich JK, Bell JT, Spector TD, Banfield JF, Ley RE.

Elife. 2013 Oct 1;2:e01102. doi: 10.7554/eLife.01102.

PMID:
24137540
[PubMed - in process]
Free PMC Article
4.

New approaches indicate constant viral diversity despite shifts in assemblage structure in an Australian hypersaline lake.

Emerson JB, Thomas BC, Andrade K, Heidelberg KB, Banfield JF.

Appl Environ Microbiol. 2013 Nov;79(21):6755-64. doi: 10.1128/AEM.01946-13. Epub 2013 Aug 30.

PMID:
23995931
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment.

Castelle CJ, Hug LA, Wrighton KC, Thomas BC, Williams KH, Wu D, Tringe SG, Singer SW, Eisen JA, Banfield JF.

Nat Commun. 2013;4:2120. doi: 10.1038/ncomms3120.

PMID:
23979677
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Comparative genomics in acid mine drainage biofilm communities reveals metabolic and structural differentiation of co-occurring archaea.

Yelton AP, Comolli LR, Justice NB, Castelle C, Denef VJ, Thomas BC, Banfield JF.

BMC Genomics. 2013 Jul 17;14:485. doi: 10.1186/1471-2164-14-485.

PMID:
23865623
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Virus-host and CRISPR dynamics in Archaea-dominated hypersaline Lake Tyrrell, Victoria, Australia.

Emerson JB, Andrade K, Thomas BC, Norman A, Allen EE, Heidelberg KB, Banfield JF.

Archaea. 2013;2013:370871. doi: 10.1155/2013/370871. Epub 2013 Jun 18.

PMID:
23853523
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

New group in the Leptospirillum clade: cultivation-independent community genomics, proteomics, and transcriptomics of the new species "Leptospirillum group IV UBA BS".

Goltsman DS, Dasari M, Thomas BC, Shah MB, VerBerkmoes NC, Hettich RL, Banfield JF.

Appl Environ Microbiol. 2013 Sep;79(17):5384-93. doi: 10.1128/AEM.00202-13. Epub 2013 May 3.

PMID:
23645189
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Metabolites associated with adaptation of microorganisms to an acidophilic, metal-rich environment identified by stable-isotope-enabled metabolomics.

Mosier AC, Justice NB, Bowen BP, Baran R, Thomas BC, Northen TR, Banfield JF.

MBio. 2013 Mar 12;4(2):e00484-12. doi: 10.1128/mBio.00484-12.

PMID:
23481603
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Short-read assembly of full-length 16S amplicons reveals bacterial diversity in subsurface sediments.

Miller CS, Handley KM, Wrighton KC, Frischkorn KR, Thomas BC, Banfield JF.

PLoS One. 2013;8(2):e56018. doi: 10.1371/journal.pone.0056018. Epub 2013 Feb 6.

PMID:
23405248
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Biostimulation induces syntrophic interactions that impact C, S and N cycling in a sediment microbial community.

Handley KM, VerBerkmoes NC, Steefel CI, Williams KH, Sharon I, Miller CS, Frischkorn KR, Chourey K, Thomas BC, Shah MB, Long PE, Hettich RL, Banfield JF.

ISME J. 2013 Apr;7(4):800-16. doi: 10.1038/ismej.2012.148. Epub 2012 Nov 29.

PMID:
23190730
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Heterotrophic archaea contribute to carbon cycling in low-pH, suboxic biofilm communities.

Justice NB, Pan C, Mueller R, Spaulding SE, Shah V, Sun CL, Yelton AP, Miller CS, Thomas BC, Shah M, VerBerkmoes N, Hettich R, Banfield JF.

Appl Environ Microbiol. 2012 Dec;78(23):8321-30. doi: 10.1128/AEM.01938-12. Epub 2012 Sep 21.

PMID:
23001646
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization.

Sharon I, Morowitz MJ, Thomas BC, Costello EK, Relman DA, Banfield JF.

Genome Res. 2013 Jan;23(1):111-20. doi: 10.1101/gr.142315.112. Epub 2012 Aug 30.

PMID:
22936250
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Dynamic viral populations in hypersaline systems as revealed by metagenomic assembly.

Emerson JB, Thomas BC, Andrade K, Allen EE, Heidelberg KB, Banfield JF.

Appl Environ Microbiol. 2012 Sep;78(17):6309-20. doi: 10.1128/AEM.01212-12. Epub 2012 Jul 6.

PMID:
22773627
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Ocular outcome and frequency of neurological manifestations in patients with acute posterior multifocal placoid pigment epitheliopathy (APMPPE).

Thomas BC, Jacobi C, Korporal M, Becker MD, Wildemann B, Mackensen F.

J Ophthalmic Inflamm Infect. 2012 Sep;2(3):125-31. doi: 10.1007/s12348-012-0077-7. Epub 2012 May 11.

PMID:
22573398
[PubMed]
Free PMC Article
16.

Persisting viral sequences shape microbial CRISPR-based immunity.

Weinberger AD, Sun CL, PluciƄski MM, Denef VJ, Thomas BC, Horvath P, Barrangou R, Gilmore MS, Getz WM, Banfield JF.

PLoS Comput Biol. 2012;8(4):e1002475. doi: 10.1371/journal.pcbi.1002475. Epub 2012 Apr 19.

PMID:
22532794
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

A semi-quantitative, synteny-based method to improve functional predictions for hypothetical and poorly annotated bacterial and archaeal genes.

Yelton AP, Thomas BC, Simmons SL, Wilmes P, Zemla A, Thelen MP, Justice N, Banfield JF.

PLoS Comput Biol. 2011 Oct;7(10):e1002230. doi: 10.1371/journal.pcbi.1002230. Epub 2011 Oct 20.

PMID:
22028637
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Lymphatic filariasis in the Democratic Republic of Congo; micro-stratification overlap mapping (MOM) as a prerequisite for control and surveillance.

Kelly-Hope LA, Thomas BC, Bockarie MJ, Molyneux DH.

Parasit Vectors. 2011 Sep 18;4:178. doi: 10.1186/1756-3305-4-178.

PMID:
21923949
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

An American founder mutation in MLH1.

Tomsic J, Liyanarachchi S, Hampel H, Morak M, Thomas BC, Raymond VM, Chittenden A, Schackert HK, Gruber SB, Syngal S, Viel A, Holinski-Feder E, Thibodeau SN, de la Chapelle A.

Int J Cancer. 2012 May 1;130(9):2088-95. doi: 10.1002/ijc.26233. Epub 2011 Aug 30.

PMID:
21671475
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data.

Miller CS, Baker BJ, Thomas BC, Singer SW, Banfield JF.

Genome Biol. 2011;12(5):R44. doi: 10.1186/gb-2011-12-5-r44. Epub 2011 May 19.

PMID:
21595876
[PubMed - indexed for MEDLINE]
Free PMC Article

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