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Results: 1 to 20 of 29

1.

Genetic Determinants for Enzymatic Digestion of Lignocellulosic Biomass Are Independent of Those for Lignin Abundance in a Maize Recombinant Inbred Population.

Penning BW, Sykes RW, Babcock NC, Dugard CK, Held MA, Klimek JF, Shreve JT, Fowler M, Ziebell A, Davis MF, Decker SR, Turner GB, Mosier NS, Springer NM, Thimmapuram J, Weil CF, McCann MC, Carpita NC.

Plant Physiol. 2014 Jun 27;165(4):1475-1487. [Epub ahead of print]

PMID:
24972714
[PubMed - as supplied by publisher]
Free PMC Article
2.

Draft Genome Sequence of Acetobacter aceti Strain 1023, a Vinegar Factory Isolate.

Hung JE, Mill CP, Clifton SW, Magrini V, Bhide K, Francois JA, Ransome AE, Fulton L, Thimmapuram J, Wilson RK, Kappock TJ.

Genome Announc. 2014 Jun 5;2(3). pii: e00550-14. doi: 10.1128/genomeA.00550-14.

PMID:
24903876
[PubMed]
Free PMC Article
3.

MED18 interaction with distinct transcription factors regulates multiple plant functions.

Lai Z, Schluttenhofer CM, Bhide K, Shreve J, Thimmapuram J, Lee SY, Yun DJ, Mengiste T.

Nat Commun. 2014;5:3064. doi: 10.1038/ncomms4064.

PMID:
24451981
[PubMed - in process]
4.

Use of glucagon in relieving esophageal food bolus impaction in the era of eosinophilic esophageal infiltration.

Thimmapuram J, Oosterveen S, Grim R.

Dysphagia. 2013 Jun;28(2):212-6. doi: 10.1007/s00455-012-9434-9. Epub 2012 Dec 1.

PMID:
23203568
[PubMed - indexed for MEDLINE]
5.

The bench scientist's guide to statistical analysis of RNA-Seq data.

Yendrek CR, Ainsworth EA, Thimmapuram J.

BMC Res Notes. 2012 Sep 14;5:506. doi: 10.1186/1756-0500-5-506.

PMID:
22980220
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Auxin and ABA act as central regulators of developmental networks associated with paradormancy in Canada thistle (Cirsium arvense).

Anderson JV, Doğramacı M, Horvath DP, Foley ME, Chao WS, Suttle JC, Thimmapuram J, Hernandez AG, Ali S, Mikel MA.

Funct Integr Genomics. 2012 Aug;12(3):515-31. doi: 10.1007/s10142-012-0280-5. Epub 2012 May 13.

PMID:
22580957
[PubMed - indexed for MEDLINE]
7.

Whole-genome resequencing of two elite sires for the detection of haplotypes under selection in dairy cattle.

Larkin DM, Daetwyler HD, Hernandez AG, Wright CL, Hetrick LA, Boucek L, Bachman SL, Band MR, Akraiko TV, Cohen-Zinder M, Thimmapuram J, Macleod IM, Harkins TT, McCague JE, Goddard ME, Hayes BJ, Lewin HA.

Proc Natl Acad Sci U S A. 2012 May 15;109(20):7693-8. doi: 10.1073/pnas.1114546109. Epub 2012 Apr 23.

PMID:
22529356
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Look before you eat: hazards of grilling.

Thimmapuram J, Oosterveen S.

Gastrointest Endosc. 2011 Dec;74(6):1399-400. doi: 10.1016/j.gie.2011.08.033. No abstract available.

PMID:
22136783
[PubMed - indexed for MEDLINE]
9.

Identification and analysis of common bean (Phaseolus vulgaris L.) transcriptomes by massively parallel pyrosequencing.

Kalavacharla V, Liu Z, Meyers BC, Thimmapuram J, Melmaiee K.

BMC Plant Biol. 2011 Oct 11;11:135. doi: 10.1186/1471-2229-11-135.

PMID:
21985325
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Analysis of 16S rRNA amplicon sequencing options on the Roche/454 next-generation titanium sequencing platform.

Tamaki H, Wright CL, Li X, Lin Q, Hwang C, Wang S, Thimmapuram J, Kamagata Y, Liu WT.

PLoS One. 2011;6(9):e25263. doi: 10.1371/journal.pone.0025263. Epub 2011 Sep 23.

PMID:
21966473
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Mitochondrial small RNAs that are up-regulated in hippocampus during olfactory discrimination training in mice.

Smalheiser NR, Lugli G, Thimmapuram J, Cook EH, Larson J.

Mitochondrion. 2011 Nov;11(6):994-5. doi: 10.1016/j.mito.2011.08.014. Epub 2011 Sep 9.

PMID:
21925291
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns.

Malik A, Korol A, Hübner S, Hernandez AG, Thimmapuram J, Ali S, Glaser F, Paz A, Avivi A, Band M.

PLoS One. 2011;6(8):e21227. doi: 10.1371/journal.pone.0021227. Epub 2011 Aug 12.

PMID:
21857902
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Orchardgrass (Dactylis glomerata L.) EST and SSR marker development, annotation, and transferability.

Bushman BS, Larson SR, Tuna M, West MS, Hernandez AG, Vullaganti D, Gong G, Robins JG, Jensen KB, Thimmapuram J.

Theor Appl Genet. 2011 Jun;123(1):119-29. doi: 10.1007/s00122-011-1571-2. Epub 2011 Apr 5.

PMID:
21465186
[PubMed - indexed for MEDLINE]
14.

Esophageal Dieulafoy lesion: an unusual cause of GI bleeding.

Thimmapuram J, Shah M, Srour J.

Gastrointest Endosc. 2011 May;73(5):1055-6. doi: 10.1016/j.gie.2010.08.056. Epub 2010 Nov 9. No abstract available.

PMID:
21067738
[PubMed - indexed for MEDLINE]
15.

Endogenous siRNAs and noncoding RNA-derived small RNAs are expressed in adult mouse hippocampus and are up-regulated in olfactory discrimination training.

Smalheiser NR, Lugli G, Thimmapuram J, Cook EH, Larson J.

RNA. 2011 Jan;17(1):166-81. doi: 10.1261/rna.2123811. Epub 2010 Nov 2.

PMID:
21045079
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies.

Wang S, Peatman E, Abernathy J, Waldbieser G, Lindquist E, Richardson P, Lucas S, Wang M, Li P, Thimmapuram J, Liu L, Vullaganti D, Kucuktas H, Murdock C, Small BC, Wilson M, Liu H, Jiang Y, Lee Y, Chen F, Lu J, Wang W, Xu P, Somridhivej B, Baoprasertkul P, Quilang J, Sha Z, Bao B, Wang Y, Wang Q, Takano T, Nandi S, Liu S, Wong L, Kaltenboeck L, Quiniou S, Bengten E, Miller N, Trant J, Rokhsar D, Liu Z; Catfish Genome Consortium.

Genome Biol. 2010 Jan 22;11(1):R8. doi: 10.1186/gb-2010-11-1-r8.

PMID:
20096101
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Diversity and strain specificity of plant cell wall degrading enzymes revealed by the draft genome of Ruminococcus flavefaciens FD-1.

Berg Miller ME, Antonopoulos DA, Rincon MT, Band M, Bari A, Akraiko T, Hernandez A, Thimmapuram J, Henrissat B, Coutinho PM, Borovok I, Jindou S, Lamed R, Flint HJ, Bayer EA, White BA.

PLoS One. 2009 Aug 14;4(8):e6650. doi: 10.1371/journal.pone.0006650.

PMID:
19680555
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Transcriptome pathways unique to dehydration tolerant relatives of modern wheat.

Ergen NZ, Thimmapuram J, Bohnert HJ, Budak H.

Funct Integr Genomics. 2009 Aug;9(3):377-96. doi: 10.1007/s10142-009-0123-1. Epub 2009 Mar 28.

PMID:
19330365
[PubMed - indexed for MEDLINE]
19.

Transcriptome analysis identifies novel responses and potential regulatory genes involved in seasonal dormancy transitions of leafy spurge (Euphorbia esula L.).

Horvath DP, Chao WS, Suttle JC, Thimmapuram J, Anderson JV.

BMC Genomics. 2008 Nov 12;9:536. doi: 10.1186/1471-2164-9-536.

PMID:
19014493
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Development and annotation of perennial Triticeae ESTs and SSR markers.

Bushman BS, Larson SR, Mott IW, Cliften PF, Wang RR, Chatterton NJ, Hernandez AG, Ali S, Kim RW, Thimmapuram J, Gong G, Liu L, Mikel MA.

Genome. 2008 Oct;51(10):779-88. doi: 10.1139/G08-062.

PMID:
18923529
[PubMed - indexed for MEDLINE]

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