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Results: 1 to 20 of 74

1.

Systems biology of host-microbe metabolomics.

Heinken A, Thiele I.

Wiley Interdiscip Rev Syst Biol Med. 2015 Apr 30. doi: 10.1002/wsbm.1301. [Epub ahead of print]

PMID:
25929487
2.

Systematic prediction of health-relevant human-microbial co-metabolism through a computational framework.

Heinken A, Thiele I.

Gut Microbes. 2015 Mar 4;6(2):120-30. doi: 10.1080/19490976.2015.1023494.

PMID:
25901891
3.

Anoxic conditions promote species-specific mutualism between gut microbes in silico.

Heinken A, Thiele I.

Appl Environ Microbiol. 2015 Apr 3. pii: AEM.00101-15. [Epub ahead of print]

PMID:
25841013
4.

Enhancing second harmonic generation in gold nanoring resonators filled with lithium niobate.

Lehr D, Reinhold J, Thiele I, Hartung H, Dietrich K, Menzel C, Pertsch T, Kley EB, Tünnermann A.

Nano Lett. 2015 Feb 11;15(2):1025-30. doi: 10.1021/nl5038819. Epub 2015 Jan 14.

PMID:
25584636
5.

Systematic genomic analysis reveals the complementary aerobic and anaerobic respiration capacities of the human gut microbiota.

Ravcheev DA, Thiele I.

Front Microbiol. 2014 Dec 5;5:674. doi: 10.3389/fmicb.2014.00674. eCollection 2014.

6.

Modeling the effects of commonly used drugs on human metabolism.

Sahoo S, Haraldsdóttir HS, Fleming RM, Thiele I.

FEBS J. 2015 Jan;282(2):297-317. doi: 10.1111/febs.13128. Epub 2014 Nov 21.

PMID:
25345908
7.

Functional metabolic map of Faecalibacterium prausnitzii, a beneficial human gut microbe.

Heinken A, Khan MT, Paglia G, Rodionov DA, Harmsen HJ, Thiele I.

J Bacteriol. 2014 Sep;196(18):3289-302. doi: 10.1128/JB.01780-14. Epub 2014 Jul 7.

8.

Genome-scale methods converge on key mitochondrial genes for the survival of human cardiomyocytes in hypoxia.

Edwards LM, Sigurdsson MI, Robbins PA, Weale ME, Cavalleri GL, Montgomery HE, Thiele I.

Circ Cardiovasc Genet. 2014 Aug;7(4):407-15. doi: 10.1161/CIRCGENETICS.113.000269. Epub 2014 May 29.

PMID:
24873932
9.

fastGapFill: efficient gap filling in metabolic networks.

Thiele I, Vlassis N, Fleming RM.

Bioinformatics. 2014 Sep 1;30(17):2529-31. doi: 10.1093/bioinformatics/btu321. Epub 2014 May 7.

10.

Membrane transporters in a human genome-scale metabolic knowledgebase and their implications for disease.

Sahoo S, Aurich MK, Jonsson JJ, Thiele I.

Front Physiol. 2014 Mar 11;5:91. doi: 10.3389/fphys.2014.00091. eCollection 2014. Review.

11.

Phospholipase A2 receptor autoantibodies and clinical outcome in patients with primary membranous nephropathy.

Hoxha E, Thiele I, Zahner G, Panzer U, Harendza S, Stahl RA.

J Am Soc Nephrol. 2014 Jun;25(6):1357-66. doi: 10.1681/ASN.2013040430. Epub 2014 Mar 7.

PMID:
24610926
12.
13.

Robust flux balance analysis of multiscale biochemical reaction networks.

Sun Y, Fleming RM, Thiele I, Saunders MA.

BMC Bioinformatics. 2013 Jul 30;14:240. doi: 10.1186/1471-2105-14-240.

14.

Applying systems biology methods to the study of human physiology in extreme environments.

Edwards LM, Thiele I.

Extrem Physiol Med. 2013 Mar 22;2(1):8. doi: 10.1186/2046-7648-2-8.

15.

Consensus and conflict cards for metabolic pathway databases.

Stobbe MD, Swertz MA, Thiele I, Rengaw T, van Kampen AH, Moerland PD.

BMC Syst Biol. 2013 Jun 26;7:50. doi: 10.1186/1752-0509-7-50.

16.

Predicting the impact of diet and enzymopathies on human small intestinal epithelial cells.

Sahoo S, Thiele I.

Hum Mol Genet. 2013 Jul 1;22(13):2705-22. doi: 10.1093/hmg/ddt119. Epub 2013 Mar 13.

17.

A community-driven global reconstruction of human metabolism.

Thiele I, Swainston N, Fleming RM, Hoppe A, Sahoo S, Aurich MK, Haraldsdottir H, Mo ML, Rolfsson O, Stobbe MD, Thorleifsson SG, Agren R, Bölling C, Bordel S, Chavali AK, Dobson P, Dunn WB, Endler L, Hala D, Hucka M, Hull D, Jameson D, Jamshidi N, Jonsson JJ, Juty N, Keating S, Nookaew I, Le Novère N, Malys N, Mazein A, Papin JA, Price ND, Selkov E Sr, Sigurdsson MI, Simeonidis E, Sonnenschein N, Smallbone K, Sorokin A, van Beek JH, Weichart D, Goryanin I, Nielsen J, Westerhoff HV, Kell DB, Mendes P, Palsson BØ.

Nat Biotechnol. 2013 May;31(5):419-25. doi: 10.1038/nbt.2488. Epub 2013 Mar 3.

18.

Contextualization procedure and modeling of monocyte specific TLR signaling.

Aurich MK, Thiele I.

PLoS One. 2012;7(12):e49978. doi: 10.1371/journal.pone.0049978. Epub 2012 Dec 6.

19.

Toward systems metabolic engineering in cyanobacteria: opportunities and bottlenecks.

Nogales J, Gudmundsson S, Thiele I.

Bioengineered. 2013 May-Jun;4(3):158-63. doi: 10.4161/bioe.22792. Epub 2012 Nov 8.

20.

A systems biology approach to studying the role of microbes in human health.

Thiele I, Heinken A, Fleming RM.

Curr Opin Biotechnol. 2013 Feb;24(1):4-12. doi: 10.1016/j.copbio.2012.10.001. Epub 2012 Oct 25. Review.

PMID:
23102866
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