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Results: 1 to 20 of 42

1.

Using transcriptomics to guide lead optimization in drug discovery projects.

Verbist B, Klambauer G, Vervoort L, Talloen W; QSTAR Consortium, Shkedy Z, Thas O, Bender A, Göhlmann HW, Hochreiter S.

Drug Discov Today. 2015 Jan 10. pii: S1359-6446(14)00485-1. doi: 10.1016/j.drudis.2014.12.014. [Epub ahead of print]

PMID:
25582842
[PubMed - as supplied by publisher]
Free Article
2.

Increasing the power of the Mann-Whitney test in randomized experiments through flexible covariate adjustment.

Vermeulen K, Thas O, Vansteelandt S.

Stat Med. 2014 Dec 5. doi: 10.1002/sim.6386. [Epub ahead of print]

PMID:
25475954
[PubMed - as supplied by publisher]
3.

Comparison of the abiotic preferences of macroinvertebrates in tropical river basins.

Everaert G, De Neve J, Boets P, Dominguez-Granda L, Mereta ST, Ambelu A, Hoang TH, Goethals PL, Thas O.

PLoS One. 2014 Oct 3;9(10):e108898. doi: 10.1371/journal.pone.0108898. eCollection 2014.

PMID:
25279673
[PubMed - in process]
Free PMC Article
4.

VirVarSeq: a low-frequency virus variant detection pipeline for Illumina sequencing using adaptive base-calling accuracy filtering.

Verbist BM, Thys K, Reumers J, Wetzels Y, Van der Borght K, Talloen W, Aerssens J, Clement L, Thas O.

Bioinformatics. 2015 Jan 1;31(1):94-101. doi: 10.1093/bioinformatics/btu587. Epub 2014 Aug 31.

PMID:
25178459
[PubMed - in process]
5.

unifiedWMWqPCR: the unified Wilcoxon-Mann-Whitney test for analyzing RT-qPCR data in R.

De Neve J, Meys J, Ottoy JP, Clement L, Thas O.

Bioinformatics. 2014 Sep 1;30(17):2494-5. doi: 10.1093/bioinformatics/btu313. Epub 2014 May 2.

PMID:
24794933
[PubMed - indexed for MEDLINE]
6.

The more, the merrier: heterotroph richness stimulates methanotrophic activity.

Ho A, de Roy K, Thas O, De Neve J, Hoefman S, Vandamme P, Heylen K, Boon N.

ISME J. 2014 Sep;8(9):1945-8. doi: 10.1038/ismej.2014.74. Epub 2014 May 2.

PMID:
24785289
[PubMed - indexed for MEDLINE]
7.

Next-generation technologies and data analytical approaches for epigenomics.

Mensaert K, Denil S, Trooskens G, Van Criekinge W, Thas O, De Meyer T.

Environ Mol Mutagen. 2014 Apr;55(3):155-70. doi: 10.1002/em.21841. Epub 2013 Dec 10. Review.

PMID:
24327356
[PubMed - indexed for MEDLINE]
8.

Dissemination and implementation of the ARIA guidelines for allergic rhinitis in general practice.

Van Hoecke H, Vandeplas G, Acke F, Thas O, De Sutter A, Gevaert P, Van Cauwenberge P, Dhooge I.

Int Arch Allergy Immunol. 2014;163(2):106-13. doi: 10.1159/000355953. Epub 2013 Nov 30.

PMID:
24296744
[PubMed - indexed for MEDLINE]
9.

An extension of the Wilcoxon-Mann-Whitney test for analyzing RT-qPCR data.

De Neve J, Thas O, Ottoy JP, Clement L.

Stat Appl Genet Mol Biol. 2013 Jun;12(3):333-46. doi: 10.1515/sagmb-2012-0003.

PMID:
23652635
[PubMed - indexed for MEDLINE]
10.

A predictive model for dysphagia following IMRT for head and neck cancer: introduction of the EMLasso technique.

De Ruyck K, Duprez F, Werbrouck J, Sabbe N, Sofie de L, Boterberg T, Madani I, Thas O, Wilfried de N, Thierens H.

Radiother Oncol. 2013 Jun;107(3):295-9. doi: 10.1016/j.radonc.2013.03.021. Epub 2013 Apr 22.

PMID:
23618501
[PubMed - indexed for MEDLINE]
11.

EMLasso: logistic lasso with missing data.

Sabbe N, Thas O, Ottoy JP.

Stat Med. 2013 Aug 15;32(18):3143-57. doi: 10.1002/sim.5760. Epub 2013 Feb 25.

PMID:
23440969
[PubMed - indexed for MEDLINE]
12.

Environmental conditions and community evenness determine the outcome of biological invasion.

De Roy K, Marzorati M, Negroni A, Thas O, Balloi A, Fava F, Verstraete W, Daffonchio D, Boon N.

Nat Commun. 2013;4:1383. doi: 10.1038/ncomms2392.

PMID:
23340423
[PubMed - indexed for MEDLINE]
13.

Butyrate-producing Clostridium cluster XIVa species specifically colonize mucins in an in vitro gut model.

Van den Abbeele P, Belzer C, Goossens M, Kleerebezem M, De Vos WM, Thas O, De Weirdt R, Kerckhof FM, Van de Wiele T.

ISME J. 2013 May;7(5):949-61. doi: 10.1038/ismej.2012.158. Epub 2012 Dec 13.

PMID:
23235287
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Improved base-calling and quality scores for 454 sequencing based on a Hurdle Poisson model.

Beuf KD, Schrijver JD, Thas O, Criekinge WV, Irizarry RA, Clement L.

BMC Bioinformatics. 2012 Nov 15;13:303. doi: 10.1186/1471-2105-13-303.

PMID:
23151247
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Analysis of tiling array expression studies with flexible designs in Bioconductor (waveTiling).

De Beuf K, Pipelers P, Andriankaja M, Thas O, Inzé D, Crainiceanu C, Clement L.

BMC Bioinformatics. 2012 Sep 14;13:234. doi: 10.1186/1471-2105-13-234.

PMID:
22974078
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Biodiversity of freshwater diatom communities during 1000 years of metal mining, land use, and climate change in central Sweden.

De Laender F, Verschuren D, Bindler R, Thas O, Janssen CR.

Environ Sci Technol. 2012 Aug 21;46(16):9097-105. doi: 10.1021/es3015452. Epub 2012 Aug 10.

PMID:
22827476
[PubMed - indexed for MEDLINE]
17.

The potential for adaptation in a natural Daphnia magna population: broad and narrow-sense heritability of net reproductive rate under Cd stress at two temperatures.

Messiaen M, Janssen CR, Thas O, De Schamphelaere KA.

Ecotoxicology. 2012 Oct;21(7):1899-910. doi: 10.1007/s10646-012-0923-2. Epub 2012 May 22.

PMID:
22614034
[PubMed - indexed for MEDLINE]
18.

An omnibus consistent adaptive percentile modified Wilcoxon rank sum test with applications in gene expression studies.

Thas O, Clement L, Rayner JC, Carvalho B, Van Criekinge W.

Biometrics. 2012 Jun;68(2):446-54. doi: 10.1111/j.1541-0420.2012.01750.x. Epub 2012 Apr 16.

PMID:
22506868
[PubMed - indexed for MEDLINE]
19.

Fast wavelet based functional models for transcriptome analysis with tiling arrays.

Clement L, De Beuf K, Thas O, Vuylsteke M, Irizarry RA, Crainiceanu CM.

Stat Appl Genet Mol Biol. 2012 Jan 6;11(1):Article 4. doi: 10.2202/1544-6115.1726.

PMID:
22499683
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Flow cytometry for fast microbial community fingerprinting.

De Roy K, Clement L, Thas O, Wang Y, Boon N.

Water Res. 2012 Mar 1;46(3):907-19. doi: 10.1016/j.watres.2011.11.076. Epub 2011 Dec 8.

PMID:
22192760
[PubMed - indexed for MEDLINE]

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