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Results: 1 to 20 of 62

1.

The dynamics of DNA methylation covariation patterns in carcinogenesis.

Teschendorff AE, Liu X, Caren H, Pollard SM, Beck S, Widschwendter M, Chen L.

PLoS Comput Biol. 2014 Jul 10;10(7):e1003709. doi: 10.1371/journal.pcbi.1003709. eCollection 2014 Jul.

PMID:
25010556
[PubMed - in process]
Free PMC Article
2.

Comparisons of non-Gaussian statistical models in DNA methylation analysis.

Ma Z, Teschendorff AE, Yu H, Taghia J, Guo J.

Int J Mol Sci. 2014 Jun 16;15(6):10835-54. doi: 10.3390/ijms150610835.

PMID:
24937687
[PubMed - in process]
Free PMC Article
3.

A systems-level integrative framework for genome-wide DNA methylation and gene expression data identifies differential gene expression modules under epigenetic control.

Jiao Y, Widschwendter M, Teschendorff AE.

Bioinformatics. 2014 May 2. pii: btu316. [Epub ahead of print]

PMID:
24794928
[PubMed - as supplied by publisher]
4.

Genome-wide age-related changes in DNA methylation and gene expression in human PBMCs.

Steegenga WT, Boekschoten MV, Lute C, Hooiveld GJ, de Groot PJ, Morris TJ, Teschendorff AE, Butcher LM, Beck S, Müller M.

Age (Dordr). 2014 Jun;36(3):9648. doi: 10.1007/s11357-014-9648-x. Epub 2014 May 2.

PMID:
24789080
[PubMed - in process]
Free PMC Article
5.

Signalling entropy: A novel network-theoretical framework for systems analysis and interpretation of functional omic data.

Teschendorff AE, Sollich P, Kuehn R.

Methods. 2014 Jun 1;67(3):282-93. doi: 10.1016/j.ymeth.2014.03.013. Epub 2014 Mar 24.

PMID:
24675401
[PubMed - in process]
6.

JAK2-centered interactome hotspot identified by an integrative network algorithm in acute Stanford type A aortic dissection.

Pan S, Wu D, Teschendorff AE, Hong T, Wang L, Qian M, Wang C, Wang X.

PLoS One. 2014 Feb 24;9(2):e89406. doi: 10.1371/journal.pone.0089406. eCollection 2014.

PMID:
24586754
[PubMed - in process]
Free PMC Article
7.

Using high-density DNA methylation arrays to profile copy number alterations.

Feber A, Guilhamon P, Lechner M, Fenton T, Wilson GA, Thirlwell C, Morris TJ, Flanagan AM, Teschendorff AE, Kelly JD, Beck S.

Genome Biol. 2014 Feb 3;15(2):R30. [Epub ahead of print]

PMID:
24490765
[PubMed - as supplied by publisher]
Free PMC Article
8.

ChAMP: 450k Chip Analysis Methylation Pipeline.

Morris TJ, Butcher LM, Feber A, Teschendorff AE, Chakravarthy AR, Wojdacz TK, Beck S.

Bioinformatics. 2014 Feb 1;30(3):428-30. doi: 10.1093/bioinformatics/btt684. Epub 2013 Dec 12.

PMID:
24336642
[PubMed - indexed for MEDLINE]
9.

Role of DNA methylation and epigenetic silencing of HAND2 in endometrial cancer development.

Jones A, Teschendorff AE, Li Q, Hayward JD, Kannan A, Mould T, West J, Zikan M, Cibula D, Fiegl H, Lee SH, Wik E, Hadwin R, Arora R, Lemech C, Turunen H, Pakarinen P, Jacobs IJ, Salvesen HB, Bagchi MK, Bagchi IC, Widschwendter M.

PLoS Med. 2013 Nov;10(11):e1001551. doi: 10.1371/journal.pmed.1001551. Epub 2013 Nov 12.

PMID:
24265601
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Cellular network entropy as the energy potential in Waddington's differentiation landscape.

Banerji CR, Miranda-Saavedra D, Severini S, Widschwendter M, Enver T, Zhou JX, Teschendorff AE.

Sci Rep. 2013 Oct 24;3:3039. doi: 10.1038/srep03039.

PMID:
24154593
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Epigenetic aging: insights from network biology.

Teschendorff AE.

Aging (Albany NY). 2013 Oct;5(10):719-20. No abstract available.

PMID:
24145222
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Distinctive topology of age-associated epigenetic drift in the human interactome.

West J, Widschwendter M, Teschendorff AE.

Proc Natl Acad Sci U S A. 2013 Aug 27;110(35):14138-43. doi: 10.1073/pnas.1307242110. Epub 2013 Aug 12.

PMID:
23940324
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Age-associated epigenetic drift: implications, and a case of epigenetic thrift?

Teschendorff AE, West J, Beck S.

Hum Mol Genet. 2013 Oct 15;22(R1):R7-R15. doi: 10.1093/hmg/ddt375. Epub 2013 Aug 4. Review.

PMID:
23918660
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Corruption of the intra-gene DNA methylation architecture is a hallmark of cancer.

Bartlett TE, Zaikin A, Olhede SC, West J, Teschendorff AE, Widschwendter M.

PLoS One. 2013 Jul 16;8(7):e68285. doi: 10.1371/journal.pone.0068285. Print 2013.

PMID:
23874574
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Meta-analysis of IDH-mutant cancers identifies EBF1 as an interaction partner for TET2.

Guilhamon P, Eskandarpour M, Halai D, Wilson GA, Feber A, Teschendorff AE, Gomez V, Hergovich A, Tirabosco R, Fernanda Amary M, Baumhoer D, Jundt G, Ross MT, Flanagan AM, Beck S.

Nat Commun. 2013;4:2166. doi: 10.1038/ncomms3166.

PMID:
23863747
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

A variational Bayes beta mixture model for feature selection in DNA methylation studies.

Ma Z, Teschendorff AE.

J Bioinform Comput Biol. 2013 Aug;11(4):1350005. doi: 10.1142/S0219720013500054. Epub 2013 Mar 18.

PMID:
23859269
[PubMed - indexed for MEDLINE]
17.

Network transfer entropy and metric space for causality inference.

Banerji CR, Severini S, Teschendorff AE.

Phys Rev E Stat Nonlin Soft Matter Phys. 2013 May;87(5):052814. Epub 2013 May 31.

PMID:
23767591
[PubMed - indexed for MEDLINE]
18.

An integrative network algorithm identifies age-associated differential methylation interactome hotspots targeting stem-cell differentiation pathways.

West J, Beck S, Wang X, Teschendorff AE.

Sci Rep. 2013;3:1630. doi: 10.1038/srep01630.

PMID:
23568264
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

An evaluation of analysis pipelines for DNA methylation profiling using the Illumina HumanMethylation450 BeadChip platform.

Marabita F, Almgren M, Lindholm ME, Ruhrmann S, Fagerström-Billai F, Jagodic M, Sundberg CJ, Ekström TJ, Teschendorff AE, Tegnér J, Gomez-Cabrero D.

Epigenetics. 2013 Mar;8(3):333-46. doi: 10.4161/epi.24008. Epub 2013 Feb 19.

PMID:
23422812
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Identification and functional validation of HPV-mediated hypermethylation in head and neck squamous cell carcinoma.

Lechner M, Fenton T, West J, Wilson G, Feber A, Henderson S, Thirlwell C, Dibra HK, Jay A, Butcher L, Chakravarthy AR, Gratrix F, Patel N, Vaz F, O'Flynn P, Kalavrezos N, Teschendorff AE, Boshoff C, Beck S.

Genome Med. 2013 Feb 5;5(2):15. doi: 10.1186/gm419. eCollection 2013.

PMID:
23419152
[PubMed]
Free PMC Article

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