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Results: 15

1.

Sequencing, Annotation and Analysis of the Syrian Hamster (Mesocricetus auratus) Transcriptome.

Tchitchek N, Safronetz D, Rasmussen AL, Martens C, Virtaneva K, Porcella SF, Feldmann H, Ebihara H, Katze MG.

PLoS One. 2014 Nov 14;9(11):e112617. doi: 10.1371/journal.pone.0112617. eCollection 2014.

PMID:
25398096
[PubMed - in process]
Free PMC Article
2.

H7N9 and other pathogenic avian influenza viruses elicit a three-pronged transcriptomic signature that is reminiscent of 1918 influenza virus and is associated with lethal outcome in mice.

Morrison J, Josset L, Tchitchek N, Chang J, Belser JA, Swayne DE, Pantin-Jackwood MJ, Tumpey TM, Katze MG.

J Virol. 2014 Sep;88(18):10556-68. doi: 10.1128/JVI.00570-14. Epub 2014 Jul 2.

PMID:
24991006
[PubMed - in process]
3.

Annotation of long non-coding RNAs expressed in collaborative cross founder mice in response to respiratory virus infection reveals a new class of interferon-stimulated transcripts.

Josset L, Tchitchek N, Gralinski LE, Ferris MT, Eisfeld AJ, Green RR, Thomas MJ, Tisoncik-Go J, Schroth GP, Kawaoka Y, Manuel de Villena FP, Baric RS, Heise MT, Peng X, Katze MG.

RNA Biol. 2014;11(7):875-90. doi: 10.4161/rna.29442. Epub 2014 Jun 12.

PMID:
24922324
[PubMed - in process]
4.

A network integration approach to predict conserved regulators related to pathogenicity of influenza and SARS-CoV respiratory viruses.

Mitchell HD, Eisfeld AJ, Sims AC, McDermott JE, Matzke MM, Webb-Robertson BJ, Tilton SC, Tchitchek N, Josset L, Li C, Ellis AL, Chang JH, Heegel RA, Luna ML, Schepmoes AA, Shukla AK, Metz TO, Neumann G, Benecke AG, Smith RD, Baric RS, Kawaoka Y, Katze MG, Waters KM.

PLoS One. 2013 Jul 25;8(7):e69374. doi: 10.1371/journal.pone.0069374. Print 2013.

PMID:
23935999
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Specific mutations in H5N1 mainly impact the magnitude and velocity of the host response in mice.

Tchitchek N, Eisfeld AJ, Tisoncik-Go J, Josset L, Gralinski LE, Bécavin C, Tilton SC, Webb-Robertson BJ, Ferris MT, Totura AL, Li C, Neumann G, Metz TO, Smith RD, Waters KM, Baric R, Kawaoka Y, Katze MG.

BMC Syst Biol. 2013 Jul 29;7:69. doi: 10.1186/1752-0509-7-69.

PMID:
23895213
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

1918 Influenza virus hemagglutinin (HA) and the viral RNA polymerase complex enhance viral pathogenicity, but only HA induces aberrant host responses in mice.

Watanabe T, Tisoncik-Go J, Tchitchek N, Watanabe S, Benecke AG, Katze MG, Kawaoka Y.

J Virol. 2013 May;87(9):5239-54. doi: 10.1128/JVI.02753-12. Epub 2013 Feb 28.

PMID:
23449804
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Systems approaches to influenza-virus host interactions and the pathogenesis of highly virulent and pandemic viruses.

Korth MJ, Tchitchek N, Benecke AG, Katze MG.

Semin Immunol. 2013 Oct 31;25(3):228-39. doi: 10.1016/j.smim.2012.11.001. Epub 2012 Dec 5. Review.

PMID:
23218769
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

2009 pandemic H1N1 influenza virus elicits similar clinical course but differential host transcriptional response in mouse, macaque, and swine infection models.

Go JT, Belisle SE, Tchitchek N, Tumpey TM, Ma W, Richt JA, Safronetz D, Feldmann H, Katze MG.

BMC Genomics. 2012 Nov 15;13:627. doi: 10.1186/1471-2164-13-627.

PMID:
23153050
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

CDS: a fold-change based statistical test for concomitant identification of distinctness and similarity in gene expression analysis.

Tchitchek N, Dzib JF, Targat B, Noth S, Benecke A, Lesne A.

Genomics Proteomics Bioinformatics. 2012 Jun;10(3):127-35. doi: 10.1016/j.gpb.2012.06.002. Epub 2012 Jun 25.

PMID:
22917185
[PubMed - indexed for MEDLINE]
Free Article
10.

Expression sequence tag library derived from peripheral blood mononuclear cells of the chlorocebus sabaeus.

Tchitchek N, Jacquelin B, Wincker P, Dossat C, Silva CD, Weissenbach J, Blancher A, Müller-Trutwin M, Benecke A.

BMC Genomics. 2012 Jun 22;13:279. doi: 10.1186/1471-2164-13-279.

PMID:
22726727
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Early transcriptional programming links progression to hepatitis C virus-induced severe liver disease in transplant patients.

Rasmussen AL, Tchitchek N, Susnow NJ, Krasnoselsky AL, Diamond DL, Yeh MM, Proll SC, Korth MJ, Walters KA, Lederer S, Larson AM, Carithers RL, Benecke A, Katze MG.

Hepatology. 2012 Jul;56(1):17-27. doi: 10.1002/hep.25612. Epub 2012 Jun 5.

PMID:
22278598
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

A chemokine gene expression signature derived from meta-analysis predicts the pathogenicity of viral respiratory infections.

Chang ST, Tchitchek N, Ghosh D, Benecke A, Katze MG.

BMC Syst Biol. 2011 Dec 22;5:202. doi: 10.1186/1752-0509-5-202.

PMID:
22189154
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Improving the efficiency of multidimensional scaling in the analysis of high-dimensional data using singular value decomposition.

Bécavin C, Tchitchek N, Mintsa-Eya C, Lesne A, Benecke A.

Bioinformatics. 2011 May 15;27(10):1413-21. doi: 10.1093/bioinformatics/btr143. Epub 2011 Mar 17.

PMID:
21421551
[PubMed - indexed for MEDLINE]
Free Article
14.

Mineralocorticoid receptor mutations differentially affect individual gene expression profiles in pseudohypoaldosteronism type 1.

Fernandes-Rosa FL, Hubert EL, Fagart J, Tchitchek N, Gomes D, Jouanno E, Benecke A, Rafestin-Oblin ME, Jeunemaitre X, Antonini SR, Zennaro MC.

J Clin Endocrinol Metab. 2011 Mar;96(3):E519-27. doi: 10.1210/jc.2010-1486. Epub 2010 Dec 15.

PMID:
21159846
[PubMed - indexed for MEDLINE]
15.

The microbiota mediates pathogen clearance from the gut lumen after non-typhoidal Salmonella diarrhea.

Endt K, Stecher B, Chaffron S, Slack E, Tchitchek N, Benecke A, Van Maele L, Sirard JC, Mueller AJ, Heikenwalder M, Macpherson AJ, Strugnell R, von Mering C, Hardt WD.

PLoS Pathog. 2010 Sep 9;6(9):e1001097. doi: 10.1371/journal.ppat.1001097.

PMID:
20844578
[PubMed - indexed for MEDLINE]
Free PMC Article

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