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Results: 1 to 20 of 48

1.

In vivo attenuation and genetic evolution of a ST247-SCCmecI MRSA clone after 13 years of pathogenic bronchopulmonary colonization in a patient with cystic fibrosis: implications of the innate immune response.

López-Collazo E, Jurado T, de Dios Caballero J, Pérez-Vázquez M, Vindel A, Hernández-Jiménez E, Tamames J, Cubillos-Zapata C, Manrique M, Tobes R, Máiz L, Cantón R, Baquero F, Del Campo R.

Mucosal Immunol. 2014 Aug 13. doi: 10.1038/mi.2014.73. [Epub ahead of print]

PMID:
25118167
[PubMed - as supplied by publisher]
2.

Analyses of cobalt-ligand and potassium-ligand bond lengths in metalloproteins: trends and patterns.

Brás NF, Ribeiro AJ, Oliveira M, Paixão NM, Tamames JA, Fernandes PA, Ramos MJ.

J Mol Model. 2014 Jun;20(6):2271. doi: 10.1007/s00894-014-2271-z. Epub 2014 May 22.

PMID:
24850495
[PubMed - in process]
3.

Complete Genome Sequence of Bacillus toyonensis BCT-7112T, the Active Ingredient of the Feed Additive Preparation Toyocerin.

Jiménez G, Blanch AR, Tamames J, Rosselló-Mora R.

Genome Announc. 2013 Dec 19;1(6). pii: e01080-13. doi: 10.1128/genomeA.01080-13.

PMID:
24356843
[PubMed]
Free PMC Article
4.

Volarea - a bioinformatics tool to calculate the surface area and the volume of molecular systems.

Ribeiro JV, Tamames JA, Cerqueira NM, Fernandes PA, Ramos MJ.

Chem Biol Drug Des. 2013 Dec;82(6):743-55. doi: 10.1111/cbdd.12197. Epub 2013 Oct 25.

PMID:
24164915
[PubMed - indexed for MEDLINE]
5.

Description of Bacillus toyonensis sp. nov., a novel species of the Bacillus cereus group, and pairwise genome comparisons of the species of the group by means of ANI calculations.

Jiménez G, Urdiain M, Cifuentes A, López-López A, Blanch AR, Tamames J, Kämpfer P, Kolstø AB, Ramón D, Martínez JF, Codoñer FM, Rosselló-Móra R.

Syst Appl Microbiol. 2013 Sep;36(6):383-91. doi: 10.1016/j.syapm.2013.04.008. Epub 2013 Jun 19.

PMID:
23791203
[PubMed - indexed for MEDLINE]
6.

COVER: a priori estimation of coverage for metagenomic sequencing.

Tamames J, de la Peña S, de Lorenzo V.

Environ Microbiol Rep. 2012 Jun;4(3):335-41. doi: 10.1111/j.1758-2229.2012.00338.x. Epub 2012 Apr 17.

PMID:
23760797
[PubMed]
7.

Taxonomy becoming a driving force in genome sequencing projects.

Tamames J, Durante-Rodríguez G.

Syst Appl Microbiol. 2013 Jun;36(4):215-7. doi: 10.1016/j.syapm.2013.01.002. Epub 2013 Mar 1.

PMID:
23453737
[PubMed - indexed for MEDLINE]
8.

New insights into the archaeal diversity of a hypersaline microbial mat obtained by a metagenomic approach.

López-López A, Richter M, Peña A, Tamames J, Rosselló-Móra R.

Syst Appl Microbiol. 2013 May;36(3):205-14. doi: 10.1016/j.syapm.2012.11.008. Epub 2013 Jan 23.

PMID:
23352736
[PubMed - indexed for MEDLINE]
9.

On the fitness of microbial taxonomy.

Tamames J, Rosselló-Móra R.

Trends Microbiol. 2012 Nov;20(11):514-6. doi: 10.1016/j.tim.2012.08.012. Epub 2012 Sep 4.

PMID:
22959411
[PubMed - indexed for MEDLINE]
10.

Metaproteogenomic insights beyond bacterial response to naphthalene exposure and bio-stimulation.

Guazzaroni ME, Herbst FA, Lores I, Tamames J, Peláez AI, López-Cortés N, Alcaide M, Del Pozo MV, Vieites JM, von Bergen M, Gallego JL, Bargiela R, López-López A, Pieper DH, Rosselló-Móra R, Sánchez J, Seifert J, Ferrer M.

ISME J. 2013 Jan;7(1):122-36. doi: 10.1038/ismej.2012.82. Epub 2012 Jul 26.

PMID:
22832345
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

The logic layout of the TOL network of Pseudomonas putida pWW0 plasmid stems from a metabolic amplifier motif (MAM) that optimizes biodegradation of m-xylene.

Silva-Rocha R, de Jong H, Tamames J, de Lorenzo V.

BMC Syst Biol. 2011 Nov 11;5:191. doi: 10.1186/1752-0509-5-191.

PMID:
22078029
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The logicome of environmental bacteria: merging catabolic and regulatory events with Boolean formalisms.

Silva-Rocha R, Tamames J, dos Santos VM, de Lorenzo V.

Environ Microbiol. 2011 Sep;13(9):2389-402. doi: 10.1111/j.1462-2920.2011.02455.x. Epub 2011 Mar 16. Review.

PMID:
21410625
[PubMed - indexed for MEDLINE]
13.

EnvMine: a text-mining system for the automatic extraction of contextual information.

Tamames J, de Lorenzo V.

BMC Bioinformatics. 2010 Jun 1;11:294. doi: 10.1186/1471-2105-11-294.

PMID:
20515448
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Metals in proteins: cluster analysis studies.

Tamames JA, Ramos MJ.

J Mol Model. 2011 Mar;17(3):429-42. doi: 10.1007/s00894-010-0733-5. Epub 2010 May 21.

PMID:
20490881
[PubMed - indexed for MEDLINE]
15.

Environmental distribution of prokaryotic taxa.

Tamames J, Abellán JJ, Pignatelli M, Camacho A, Moya A.

BMC Microbiol. 2010 Mar 22;10:85. doi: 10.1186/1471-2180-10-85.

PMID:
20307274
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Immunity and other defenses in pea aphids, Acyrthosiphon pisum.

Gerardo NM, Altincicek B, Anselme C, Atamian H, Barribeau SM, de Vos M, Duncan EJ, Evans JD, Gabaldón T, Ghanim M, Heddi A, Kaloshian I, Latorre A, Moya A, Nakabachi A, Parker BJ, Pérez-Brocal V, Pignatelli M, Rahbé Y, Ramsey JS, Spragg CJ, Tamames J, Tamarit D, Tamborindeguy C, Vincent-Monegat C, Vilcinskas A.

Genome Biol. 2010;11(2):R21. doi: 10.1186/gb-2010-11-2-r21. Epub 2010 Feb 23.

PMID:
20178569
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

High diversity of the viral community from an Antarctic lake.

López-Bueno A, Tamames J, Velázquez D, Moya A, Quesada A, Alcamí A.

Science. 2009 Nov 6;326(5954):858-61. doi: 10.1126/science.1179287.

PMID:
19892985
[PubMed - indexed for MEDLINE]
Free Article
18.

EnvDB, a database for describing the environmental distribution of prokaryotic taxa.

Pignatelli M, Moya A, Tamames J.

Environ Microbiol Rep. 2009 Jun;1(3):191-7. doi: 10.1111/j.1758-2229.2009.00030.x. Epub 2009 Apr 29.

PMID:
23765793
[PubMed]
19.

Microbial responses to environmental arsenic.

Páez-Espino D, Tamames J, de Lorenzo V, Cánovas D.

Biometals. 2009 Feb;22(1):117-30. doi: 10.1007/s10534-008-9195-y. Epub 2009 Jan 7. Review.

PMID:
19130261
[PubMed - indexed for MEDLINE]
20.

Metagenomics reveals our incomplete knowledge of global diversity.

Pignatelli M, Aparicio G, Blanquer I, Hernández V, Moya A, Tamames J.

Bioinformatics. 2008 Sep 15;24(18):2124-5. doi: 10.1093/bioinformatics/btn355. Epub 2008 Jul 13. No abstract available.

PMID:
18625611
[PubMed - indexed for MEDLINE]
Free PMC Article

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