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Results: 18

1.

A systems biology analysis of brain microvascular endothelial cell lipotoxicity.

Aung HH, Tsoukalas A, Rutledge JC, Tagkopoulos I.

BMC Syst Biol. 2014 Jul 4;8(1):80. [Epub ahead of print]

PMID:
24993133
[PubMed - as supplied by publisher]
Free Article
2.

An integrative, multi-scale, genome-wide model reveals the phenotypic landscape of Escherichia coli.

Carrera J, Estrela R, Luo J, Rai N, Tsoukalas A, Tagkopoulos I.

Mol Syst Biol. 2014 Jul 1;10(7):735. doi: 10.15252/msb.20145108.

PMID:
24987114
[PubMed - in process]
Free Article
3.

Optimal Part and Module Selection for Synthetic Gene Circuit Design Automation.

Huynh L, Tagkopoulos I.

ACS Synth Biol. 2014 Feb 27. [Epub ahead of print]

PMID:
24933033
[PubMed - as supplied by publisher]
4.

From vital signs to clinical outcomes for patients with sepsis: a machine learning basis for a clinical decision support system.

Gultepe E, Green JP, Nguyen H, Adams J, Albertson T, Tagkopoulos I.

J Am Med Inform Assoc. 2014 Mar-Apr;21(2):315-25. doi: 10.1136/amiajnl-2013-001815. Epub 2013 Aug 19.

PMID:
23959843
[PubMed - indexed for MEDLINE]
5.

Promoter element arising from the fusion of standard BioBrick parts.

Yao AI, Fenton TA, Owsley K, Seitzer P, Larsen DJ, Sit H, Lau J, Nair A, Tantiongloc J, Tagkopoulos I, Facciotti MT.

ACS Synth Biol. 2013 Feb 15;2(2):111-20. doi: 10.1021/sb300114d. Epub 2013 Jan 11.

PMID:
23656374
[PubMed - indexed for MEDLINE]
6.

SBROME: a scalable optimization and module matching framework for automated biosystems design.

Huynh L, Tsoukalas A, Köppe M, Tagkopoulos I.

ACS Synth Biol. 2013 May 17;2(5):263-73. doi: 10.1021/sb300095m. Epub 2013 Mar 11.

PMID:
23654271
[PubMed - indexed for MEDLINE]
7.

A flood-based information flow analysis and network minimization method for gene regulatory networks.

Pavlogiannis A, Mozhayskiy V, Tagkopoulos I.

BMC Bioinformatics. 2013 Apr 24;14:137. doi: 10.1186/1471-2105-14-137.

PMID:
23617932
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Evolutionary potential, cross-stress behavior and the genetic basis of acquired stress resistance in Escherichia coli.

Dragosits M, Mozhayskiy V, Quinones-Soto S, Park J, Tagkopoulos I.

Mol Syst Biol. 2013;9:643. doi: 10.1038/msb.2012.76.

PMID:
23385483
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Microbial evolution in vivo and in silico: methods and applications.

Mozhayskiy V, Tagkopoulos I.

Integr Biol (Camb). 2013 Feb;5(2):262-77. doi: 10.1039/c2ib20095c. Review.

PMID:
23096365
[PubMed - indexed for MEDLINE]
10.

Microbial factories under control: auto-regulatory control through engineered stress-induced feedback.

Tagkopoulos I.

Bioengineered. 2013 Jan-Feb;4(1):5-8. doi: 10.4161/bioe.21935. Epub 2012 Aug 24.

PMID:
22922761
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Transcriptional network analysis identifies BACH1 as a master regulator of breast cancer bone metastasis.

Liang Y, Wu H, Lei R, Chong RA, Wei Y, Lu X, Tagkopoulos I, Kung SY, Yang Q, Hu G, Kang Y.

J Biol Chem. 2012 Sep 28;287(40):33533-44. Epub 2012 Aug 8.

PMID:
22875853
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Horizontal gene transfer dynamics and distribution of fitness effects during microbial in silico evolution.

Mozhayskiy V, Tagkopoulos I.

BMC Bioinformatics. 2012 Jun 25;13 Suppl 10:S13. doi: 10.1186/1471-2105-13-S10-S13.

PMID:
22759418
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Guided evolution of in silico microbial populations in complex environments accelerates evolutionary rates through a step-wise adaptation.

Mozhayskiy V, Tagkopoulos I.

BMC Bioinformatics. 2012 Jun 25;13 Suppl 10:S10. doi: 10.1186/1471-2105-13-S10-S10.

PMID:
22759415
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Automatic design of synthetic gene circuits through mixed integer non-linear programming.

Huynh L, Kececioglu J, Köppe M, Tagkopoulos I.

PLoS One. 2012;7(4):e35529. doi: 10.1371/journal.pone.0035529. Epub 2012 Apr 20.

PMID:
22536398
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

A synthetic biology approach to self-regulatory recombinant protein production in Escherichia coli.

Dragosits M, Nicklas D, Tagkopoulos I.

J Biol Eng. 2012 Mar 30;6(1):2. doi: 10.1186/1754-1611-6-2.

PMID:
22463687
[PubMed]
Free PMC Article
16.

Predictive behavior within microbial genetic networks.

Tagkopoulos I, Liu YC, Tavazoie S.

Science. 2008 Jun 6;320(5881):1313-7. doi: 10.1126/science.1154456. Epub 2008 May 8.

PMID:
18467556
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Symmetric and asymmetric multi-modality biclustering analysis for microarray data matrix.

Kung SY, Mak MW, Tagkopoulos I.

J Bioinform Comput Biol. 2006 Apr;4(2):275-98.

PMID:
16819784
[PubMed - indexed for MEDLINE]
18.

Multi-metric and multi-substructure biclustering analysis for gene expression data.

Kung SY, Mak MW, Tagkopoulos I.

Proc IEEE Comput Syst Bioinform Conf. 2005:123-34.

PMID:
16447970
[PubMed - indexed for MEDLINE]

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