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Results: 19

1.

Reconstructing the modular recombination history of Staphylococcus aureus phages.

Swenson KM, Guertin P, DeschĂȘnes H, Bergeron A.

BMC Bioinformatics. 2013;14 Suppl 15:S17. doi: 10.1186/1471-2105-14-S15-S17. Epub 2013 Oct 15.

PMID:
24564731
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Gene tree correction guided by orthology.

Lafond M, Semeria M, Swenson KM, Tannier E, El-Mabrouk N.

BMC Bioinformatics. 2013;14 Suppl 15:S5. doi: 10.1186/1471-2105-14-S15-S5. Epub 2013 Oct 15.

PMID:
24564227
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

A graph-theoretic approach for inparalog detection.

Tremblay-Savard O, Swenson KM.

BMC Bioinformatics. 2012;13 Suppl 19:S16. doi: 10.1186/1471-2105-13-S19-S16. Epub 2012 Dec 19.

PMID:
23281701
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Gene trees and species trees: irreconcilable differences.

Swenson KM, El-Mabrouk N.

BMC Bioinformatics. 2012;13 Suppl 19:S15. doi: 10.1186/1471-2105-13-S19-S15. Epub 2012 Dec 19.

PMID:
23281654
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Gene tree correction for reconciliation and species tree inference.

Swenson KM, Doroftei A, El-Mabrouk N.

Algorithms Mol Biol. 2012 Nov 20;7(1):31. doi: 10.1186/1748-7188-7-31.

PMID:
23167951
[PubMed]
Free PMC Article
6.

Lichen sclerosus: a 5-year follow-up after topical, subdermal, or combined therapy.

Ventolini G, Swenson KM, Galloway ML.

J Low Genit Tract Dis. 2012 Jul;16(3):271-4. doi: 10.1097/LGT.0b013e31823da7e8.

PMID:
22258061
[PubMed - indexed for MEDLINE]
7.

The Kernel of Maximum Agreement Subtrees.

Swenson KM, Chen E, Pattengale ND, Sankoff D.

IEEE/ACM Trans Comput Biol Bioinform. 2012 Jul-Aug;9(4):1023-31. doi: 10.1109/TCBB.2012.11.

PMID:
22231622
[PubMed - indexed for MEDLINE]
8.

Theory and practice of ultra-perfection.

Ouangraoua A, Bergeron A, Swenson KM.

J Comput Biol. 2011 Sep;18(9):1219-30. doi: 10.1089/cmb.2011.0086.

PMID:
21899427
[PubMed - indexed for MEDLINE]
9.

Listing all parsimonious reversal sequences: new algorithms and perspectives.

Badr G, Swenson KM, Sankoff D.

J Comput Biol. 2011 Sep;18(9):1201-10. doi: 10.1089/cmb.2011.0133.

PMID:
21899425
[PubMed - indexed for MEDLINE]
10.

A 2-approximation for the minimum duplication speciation problem.

Ouangraoua A, Swenson KM, Chauve C.

J Comput Biol. 2011 Sep;18(9):1041-53. doi: 10.1089/cmb.2011.0108.

PMID:
21899414
[PubMed - indexed for MEDLINE]
11.

Listing all sorting reversals in quadratic time.

Swenson KM, Badr G, Sankoff D.

Algorithms Mol Biol. 2011 Apr 19;6:11. doi: 10.1186/1748-7188-6-11.

PMID:
21504604
[PubMed]
Free PMC Article
12.

Uncovering hidden phylogenetic consensus in large data sets.

Pattengale ND, Aberer AJ, Swenson KM, Stamatakis A, Moret BM.

IEEE/ACM Trans Comput Biol Bioinform. 2011 Jul-Aug;8(4):902-11. doi: 10.1109/TCBB.2011.28.

PMID:
21301032
[PubMed - indexed for MEDLINE]
13.

Sorting signed permutations by inversions in O(nlogn) time.

Swenson KM, Rajan V, Lin Y, Moret BM.

J Comput Biol. 2010 Mar;17(3):489-501. doi: 10.1089/cmb.2009.0184.

PMID:
20377459
[PubMed - indexed for MEDLINE]
14.

Estimating true evolutionary distances under rearrangements, duplications, and losses.

Lin Y, Rajan V, Swenson KM, Moret BM.

BMC Bioinformatics. 2010 Jan 18;11 Suppl 1:S54. doi: 10.1186/1471-2105-11-S1-S54.

PMID:
20122229
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Heuristics for the inversion median problem.

Rajan V, Xu AW, Lin Y, Swenson KM, Moret BM.

BMC Bioinformatics. 2010 Jan 18;11 Suppl 1:S30. doi: 10.1186/1471-2105-11-S1-S30.

PMID:
20122203
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Hurdles and sorting by inversions: combinatorial, statistical, and experimental results.

Swenson KM, Lin Y, Rajan V, Moret BM.

J Comput Biol. 2009 Oct;16(10):1339-51. doi: 10.1089/cmb.2009.0156.

PMID:
19747037
[PubMed - indexed for MEDLINE]
17.

Inversion-based genomic signatures.

Swenson KM, Moret BM.

BMC Bioinformatics. 2009 Jan 30;10 Suppl 1:S7. doi: 10.1186/1471-2105-10-S1-S7.

PMID:
19208174
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Maximum independent sets of commuting and noninterfering inversions.

Swenson KM, To Y, Tang J, Moret BM.

BMC Bioinformatics. 2009 Jan 30;10 Suppl 1:S6. doi: 10.1186/1471-2105-10-S1-S6.

PMID:
19208163
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Fas ligand gene transfer to renal allografts in rats: effects on allograft survival.

Swenson KM, Ke B, Wang T, Markowitz JS, Maggard MA, Spear GS, Imagawa DK, Goss JA, Busuttil RW, Seu P.

Transplantation. 1998 Jan 27;65(2):155-60.

PMID:
9458007
[PubMed - indexed for MEDLINE]

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