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Results: 1 to 20 of 22

1.

A nucleosome turnover map reveals that the stability of histone H4 Lys20 methylation depends on histone recycling in transcribed chromatin.

Svensson JP, Shukla M, Menendez-Benito V, Norman-Axelsson U, Audergon P, Sinha I, Tanny JC, Allshire RC, Ekwall K.

Genome Res. 2015 Jun;25(6):872-83. doi: 10.1101/gr.188870.114. Epub 2015 Mar 16.

PMID:
25778913
2.

Epigenetic activation and inactivation of centromeres.

Svensson JP, Ekwall K.

Epigenomics. 2014;6(5):451-4. doi: 10.2217/epi.14.33. No abstract available.

PMID:
25431935
3.

Centromeric histone H2B monoubiquitination promotes noncoding transcription and chromatin integrity.

Sadeghi L, Siggens L, Svensson JP, Ekwall K.

Nat Struct Mol Biol. 2014 Mar;21(3):236-43. doi: 10.1038/nsmb.2776. Epub 2014 Feb 16.

PMID:
24531659
4.

Genomic phenotyping by barcode sequencing broadly distinguishes between alkylating agents, oxidizing agents, and non-genotoxic agents, and reveals a role for aromatic amino acids in cellular recovery after quinone exposure.

Svensson JP, Quirós Pesudo L, McRee SK, Adeleye Y, Carmichael P, Samson LD.

PLoS One. 2013 Sep 9;8(9):e73736. doi: 10.1371/journal.pone.0073736. eCollection 2013.

5.

Microfluidic genome-wide profiling of intrinsic electrical properties in Saccharomyces cerevisiae.

Vahey MD, Quiros Pesudo L, Svensson JP, Samson LD, Voldman J.

Lab Chip. 2013 Jul 21;13(14):2754-63. doi: 10.1039/c3lc50162k.

6.

CHD1 remodelers regulate nucleosome spacing in vitro and align nucleosomal arrays over gene coding regions in S. pombe.

Pointner J, Persson J, Prasad P, Norman-Axelsson U, Strålfors A, Khorosjutina O, Krietenstein N, Svensson JP, Ekwall K, Korber P.

EMBO J. 2012 Nov 28;31(23):4388-403. doi: 10.1038/emboj.2012.289. Epub 2012 Oct 26.

7.

Factors that promote H3 chromatin integrity during transcription prevent promiscuous deposition of CENP-A(Cnp1) in fission yeast.

Choi ES, Strålfors A, Catania S, Castillo AG, Svensson JP, Pidoux AL, Ekwall K, Allshire RC.

PLoS Genet. 2012 Sep;8(9):e1002985. doi: 10.1371/journal.pgen.1002985. Epub 2012 Sep 20.

8.

Hierarchical modularity and the evolution of genetic interactomes across species.

Ryan CJ, Roguev A, Patrick K, Xu J, Jahari H, Tong Z, Beltrao P, Shales M, Qu H, Collins SR, Kliegman JI, Jiang L, Kuo D, Tosti E, Kim HS, Edelmann W, Keogh MC, Greene D, Tang C, Cunningham P, Shokat KM, Cagney G, Svensson JP, Guthrie C, Espenshade PJ, Ideker T, Krogan NJ.

Mol Cell. 2012 Jun 8;46(5):691-704. doi: 10.1016/j.molcel.2012.05.028.

9.

Identification of novel human damage response proteins targeted through yeast orthology.

Svensson JP, Fry RC, Wang E, Somoza LA, Samson LD.

PLoS One. 2012;7(5):e37368. doi: 10.1371/journal.pone.0037368. Epub 2012 May 16.

10.

Genomic phenotyping of the essential and non-essential yeast genome detects novel pathways for alkylation resistance.

Svensson JP, Pesudo LQ, Fry RC, Adeleye YA, Carmichael P, Samson LD.

BMC Syst Biol. 2011 Oct 6;5:157. doi: 10.1186/1752-0509-5-157.

11.

Podbat: a novel genomic tool reveals Swr1-independent H2A.Z incorporation at gene coding sequences through epigenetic meta-analysis.

Sadeghi L, Bonilla C, Strålfors A, Ekwall K, Svensson JP.

PLoS Comput Biol. 2011 Aug;7(8):e1002163. doi: 10.1371/journal.pcbi.1002163. Epub 2011 Aug 25.

12.

Topoisomerases, chromatin and transcription termination.

Durand-Dubief M, Svensson JP, Persson J, Ekwall K.

Transcription. 2011 Mar;2(2):66-70.

13.

Genomic predictors of interindividual differences in response to DNA damaging agents.

Fry RC, Svensson JP, Valiathan C, Wang E, Hogan BJ, Bhattacharya S, Bugni JM, Whittaker CA, Samson LD.

Genes Dev. 2008 Oct 1;22(19):2621-6. doi: 10.1101/gad.1688508. Epub 2008 Sep 19.

14.

Transcriptional networks in S. cerevisiae linked to an accumulation of base excision repair intermediates.

Rusyn I, Fry RC, Begley TJ, Klapacz J, Svensson JP, Ambrose M, Samson LD.

PLoS One. 2007 Nov 28;2(11):e1252.

15.

Activation of inflammation/NF-kappaB signaling in infants born to arsenic-exposed mothers.

Fry RC, Navasumrit P, Valiathan C, Svensson JP, Hogan BJ, Luo M, Bhattacharya S, Kandjanapa K, Soontararuks S, Nookabkaew S, Mahidol C, Ruchirawat M, Samson LD.

PLoS Genet. 2007 Nov;3(11):e207.

16.

A portrait of cisplatin-induced transcriptional changes in mouse embryonic stem cells reveals a dominant p53-like response.

Kruse JJ, Svensson JP, Huigsloot M, Giphart-Gassler M, Schoonen WG, Polman JE, Jean Horbach G, van de Water B, Vrieling H.

Mutat Res. 2007 Apr 1;617(1-2):58-70. Epub 2007 Feb 2.

PMID:
17327130
17.

Analysis of gene expression using gene sets discriminates cancer patients with and without late radiation toxicity.

Svensson JP, Stalpers LJ, Esveldt-van Lange RE, Franken NA, Haveman J, Klein B, Turesson I, Vrieling H, Giphart-Gassler M.

PLoS Med. 2006 Oct;3(10):e422.

18.

Wnt but not BMP signaling is involved in the inhibitory action of sclerostin on BMP-stimulated bone formation.

van Bezooijen RL, Svensson JP, Eefting D, Visser A, van der Horst G, Karperien M, Quax PH, Vrieling H, Papapoulos SE, ten Dijke P, Löwik CW.

J Bone Miner Res. 2007 Jan;22(1):19-28.

PMID:
17032150
19.

Dissecting systems-wide data using mixture models: application to identify affected cellular processes.

Svensson JP, de Menezes RX, Turesson I, Giphart-Gassler M, Vrieling H.

BMC Bioinformatics. 2005 Jul 14;6:177.

20.

Microarray analysis of gene expression profiles of cardiac myocytes and fibroblasts after mechanical stress, ionising or ultraviolet radiation.

Boerma M, van der Wees CG, Vrieling H, Svensson JP, Wondergem J, van der Laarse A, Mullenders LH, van Zeeland AA.

BMC Genomics. 2005 Jan 18;6:6.

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