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Results: 14

1.

Mathematical optimization applications in metabolic networks.

Zomorrodi AR, Suthers PF, Ranganathan S, Maranas CD.

Metab Eng. 2012 Nov;14(6):672-86. doi: 10.1016/j.ymben.2012.09.005. Epub 2012 Sep 28. Review.

PMID:
23026121
[PubMed - indexed for MEDLINE]
2.

Orchestrating hi-fi annotations.

Suthers PF, Maranas CD.

Nat Chem Biol. 2012 Oct;8(10):810-1. doi: 10.1038/nchembio.1067.

PMID:
22987007
[PubMed - indexed for MEDLINE]
3.

MetRxn: a knowledgebase of metabolites and reactions spanning metabolic models and databases.

Kumar A, Suthers PF, Maranas CD.

BMC Bioinformatics. 2012 Jan 10;13:6. doi: 10.1186/1471-2105-13-6.

PMID:
22233419
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Zea mays iRS1563: a comprehensive genome-scale metabolic reconstruction of maize metabolism.

Saha R, Suthers PF, Maranas CD.

PLoS One. 2011;6(7):e21784. doi: 10.1371/journal.pone.0021784. Epub 2011 Jul 6.

PMID:
21755001
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Construction of an E. Coli genome-scale atom mapping model for MFA calculations.

Ravikirthi P, Suthers PF, Maranas CD.

Biotechnol Bioeng. 2011 Jun;108(6):1372-82. doi: 10.1002/bit.23070. Epub 2011 Feb 19.

PMID:
21328316
[PubMed - indexed for MEDLINE]
6.

OptForce: an optimization procedure for identifying all genetic manipulations leading to targeted overproductions.

Ranganathan S, Suthers PF, Maranas CD.

PLoS Comput Biol. 2010 Apr 15;6(4):e1000744. doi: 10.1371/journal.pcbi.1000744.

PMID:
20419153
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Improved computational performance of MFA using elementary metabolite units and flux coupling.

Suthers PF, Chang YJ, Maranas CD.

Metab Eng. 2010 Mar;12(2):123-8. doi: 10.1016/j.ymben.2009.10.002. Epub 2009 Oct 27.

PMID:
19837183
[PubMed - indexed for MEDLINE]
8.

Genome-scale gene/reaction essentiality and synthetic lethality analysis.

Suthers PF, Zomorrodi A, Maranas CD.

Mol Syst Biol. 2009;5:301. doi: 10.1038/msb.2009.56. Epub 2009 Aug 18.

PMID:
19690570
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Genome scale reconstruction of a Salmonella metabolic model: comparison of similarity and differences with a commensal Escherichia coli strain.

AbuOun M, Suthers PF, Jones GI, Carter BR, Saunders MP, Maranas CD, Woodward MJ, Anjum MF.

J Biol Chem. 2009 Oct 23;284(43):29480-8. doi: 10.1074/jbc.M109.005868. Epub 2009 Aug 18.

PMID:
19690172
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

A genome-scale metabolic reconstruction of Mycoplasma genitalium, iPS189.

Suthers PF, Dasika MS, Kumar VS, Denisov G, Glass JI, Maranas CD.

PLoS Comput Biol. 2009 Feb;5(2):e1000285. doi: 10.1371/journal.pcbi.1000285. Epub 2009 Feb 13.

PMID:
19214212
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Identification of optimal measurement sets for complete flux elucidation in metabolic flux analysis experiments.

Chang Y, Suthers PF, Maranas CD.

Biotechnol Bioeng. 2008 Aug 15;100(6):1039-49. doi: 10.1002/bit.21926.

PMID:
18553391
[PubMed - indexed for MEDLINE]
12.

Metabolic flux elucidation for large-scale models using 13C labeled isotopes.

Suthers PF, Burgard AP, Dasika MS, Nowroozi F, Van Dien S, Keasling JD, Maranas CD.

Metab Eng. 2007 Sep-Nov;9(5-6):387-405. Epub 2007 May 29.

PMID:
17632026
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Rapid responses of ribosomal RNA synthesis to nutrient shifts.

Suthers PF, Gourse RL, Yin J.

Biotechnol Bioeng. 2007 Aug 1;97(5):1230-45.

PMID:
17216653
[PubMed - indexed for MEDLINE]
14.

Effects of Escherichia coli physiology on growth of phage T7 in vivo and in silico.

You L, Suthers PF, Yin J.

J Bacteriol. 2002 Apr;184(7):1888-94.

PMID:
11889095
[PubMed - indexed for MEDLINE]
Free PMC Article

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