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Items: 20

1.

Multi-omic data integration and analysis using systems genomics approaches: methods and applications in animal production, health and welfare.

Suravajhala P, Kogelman LJ, Kadarmideen HN.

Genet Sel Evol. 2016 Apr 29;48(1):38. doi: 10.1186/s12711-016-0217-x. Review.

2.

Toxicity and tolerance of aluminum in plants: tailoring plants to suit to acid soils.

Sade H, Meriga B, Surapu V, Gadi J, Sunita MS, Suravajhala P, Kavi Kishor PB.

Biometals. 2016 Apr;29(2):187-210. doi: 10.1007/s10534-016-9910-z. Epub 2016 Jan 21. Review.

PMID:
26796895
3.

On genome annotation of Brucellaphage Gadvasu (BpG): discovery of ORFans for integrated systems biology approaches.

Chachra D, Kaur P, Siddavatam P, Suravajhala P, Saxena HM.

Syst Synth Biol. 2015 Dec;9(Suppl 1):57-62. doi: 10.1007/s11693-015-9185-7. Epub 2015 Nov 21.

PMID:
26702310
4.

Is HNF4A a candidate to study zinc finger protein slug?

Suravajhala P, Singh TR.

Int J Bioinform Res Appl. 2015;11(4):366-73.

PMID:
26561320
5.

Potential role of lncRNA cyp2c91-protein interactions on diseases of the immune system.

Suravajhala P, Kogelman LJ, Mazzoni G, Kadarmideen HN.

Front Genet. 2015 Jul 28;6:255. doi: 10.3389/fgene.2015.00255. eCollection 2015.

6.

Editorial: Annotation and curation of uncharacterized proteins: systems biology approaches.

Suravajhala P, Benso A, Valadi JK.

Front Genet. 2015 Jun 30;6:224. doi: 10.3389/fgene.2015.00224. eCollection 2015. No abstract available.

7.

On Brucella pathogenesis: looking for the unified challenge in systems and synthetic biology.

Chiliveru S, Appari M, Suravajhala P.

Syst Synth Biol. 2015 Jun;9(1-2):73-5. doi: 10.1007/s11693-014-9158-2. Epub 2014 Dec 21.

PMID:
25972991
8.

Introducing the hypothome: a way to integrate predicted proteins in interactomes.

Desler C, Zambach S, Suravajhala P, Rasmussen LJ.

Int J Bioinform Res Appl. 2014;10(6):647-52. doi: 10.1504/IJBRA.2014.065247.

PMID:
25335568
9.

Making novel proteins from pseudogenes.

Shidhi PR, Suravajhala P, Nayeema A, Nair AS, Singh S, Dhar PK.

Bioinformatics. 2015 Jan 1;31(1):33-9. doi: 10.1093/bioinformatics/btu615. Epub 2014 Sep 17.

10.

Identifying pseudogenes from hypothetical proteins for making synthetic proteins.

Shidhi PR, Nair AS, Suravajhala P.

Syst Synth Biol. 2014 Jun;8(2):169-71. doi: 10.1007/s11693-014-9148-4. Epub 2014 Apr 20.

11.

Androgenesis in chickpea: anther culture and expressed sequence tags derived annotation.

Panchangam SS, Mallikarjuna N, Gaur PM, Suravajhala P.

Indian J Exp Biol. 2014 Feb;52(2):181-8.

PMID:
24597152
12.

A combined approach for genome wide protein function annotation/prediction.

Benso A, Di Carlo S, Ur Rehman H, Politano G, Savino A, Suravajhala P.

Proteome Sci. 2013 Nov 7;11(Suppl 1):S1. doi: 10.1186/1477-5956-11-S1-S1. Epub 2013 Nov 7.

13.

Challenges in the miRNA research.

Singh TR, Gupta A, Suravajhala P.

Int J Bioinform Res Appl. 2013;9(6):576-83. doi: 10.1504/IJBRA.2013.056620. Review.

PMID:
24084238
14.

A classification scoring schema to validate protein interactors.

Suravajhala P, Sundararajan VS.

Bioinformation. 2012;8(1):34-9. Epub 2012 Jan 6.

15.

MetaBase--the wiki-database of biological databases.

Bolser DM, Chibon PY, Palopoli N, Gong S, Jacob D, Del Angel VD, Swan D, Bassi S, González V, Suravajhala P, Hwang S, Romano P, Edwards R, Bishop B, Eargle J, Shtatland T, Provart NJ, Clements D, Renfro DP, Bhak D, Bhak J.

Nucleic Acids Res. 2012 Jan;40(Database issue):D1250-4. doi: 10.1093/nar/gkr1099. Epub 2011 Dec 1.

16.

Analysis of peanut leaf proteome.

Katam R, Basha SM, Suravajhala P, Pechan T.

J Proteome Res. 2010 May 7;9(5):2236-54. doi: 10.1021/pr901009n.

PMID:
20345176
17.

Ten simple rules for organizing a virtual conference--anywhere.

Gichora NN, Fatumo SA, Ngara MV, Chelbat N, Ramdayal K, Opap KB, Siwo GH, Adebiyi MO, El Gonnouni A, Zofou D, Maurady AA, Adebiyi EF, de Villiers EP, Masiga DK, Bizzaro JW, Suravajhala P, Ommeh SC, Hide W.

PLoS Comput Biol. 2010 Feb 26;6(2):e1000650. doi: 10.1371/journal.pcbi.1000650. No abstract available.

18.

Fungome: Annotating proteins implicated in fungal pathogenesis.

Gudimella R, Nallapeta S, Varadwaj P, Suravajhala P.

Bioinformation. 2010 Nov 1;5(5):202-7.

19.

In Silico screening for functional candidates amongst hypothetical proteins.

Desler C, Suravajhala P, Sanderhoff M, Rasmussen M, Rasmussen LJ.

BMC Bioinformatics. 2009 Sep 16;10:289. doi: 10.1186/1471-2105-10-289.

20.

Hypo, hype and 'hyp' human proteins.

Suravajhala P.

Bioinformation. 2007 Jul 10;2(1):31-3.

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