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Results: 1 to 20 of 126

1.

CWig: compressed representation of Wiggle/BedGraph format.

Huy Hoang D, Sung WK.

Bioinformatics. 2014 May 27. pii: btu330. [Epub ahead of print]

PMID:
24867943
[PubMed - as supplied by publisher]
2.

A genomic portrait of resectable hepatocellular carcinomas: Implications of RB1 and FGF19 aberrations for patient stratification.

Ahn SM, Jang SJ, Shim JH, Kim D, Hong SM, Sung CO, Baek D, Haq F, Ansari AA, Lee SY, Chun SM, Choi S, Choi HJ, Kim J, Kim S, Hwang S, Lee YJ, Lee JE, Jung WR, Jang HY, Yang E, Sung WK, Lee NP, Mao M, Lee C, Zucman-Rossi J, Yu E, Lee HC, Kong G.

Hepatology. 2014 May 3. doi: 10.1002/hep.27198. [Epub ahead of print]

PMID:
24798001
[PubMed - as supplied by publisher]
3.

International Conference on Genome Informatics (GIW 2013) in Singapore: Introduction to the systems biology contributions.

Eisenhaber F, Sung WK, Wong L.

BMC Syst Biol. 2013;7 Suppl 6:I1. doi: 10.1186/1752-0509-7-S6-I1. Epub 2013 Dec 13. No abstract available.

PMID:
24625351
[PubMed - in process]
Free PMC Article
4.

The Brm-HDAC3-Erm repressor complex suppresses dedifferentiation in Drosophila type II neuroblast lineages.

Koe CT, Li S, Rossi F, Wong JJ, Wang Y, Zhang Z, Chen K, Aw SS, Richardson HE, Robson P, Sung WK, Yu F, Gonzalez C, Wang H.

Elife (Cambridge). 2014 Mar 11;3:e01906. doi: 10.7554/eLife.01906.

PMID:
24618901
[PubMed]
Free PMC Article
5.

Decoding complex patterns of genomic rearrangement in hepatocellular carcinoma.

Fernandez-Banet J, Lee NP, Chan KT, Gao H, Liu X, Sung WK, Tan W, Fan ST, Poon RT, Li S, Ching K, Rejto PA, Mao M, Kan Z.

Genomics. 2014 Feb-Mar;103(2-3):189-203. doi: 10.1016/j.ygeno.2014.01.003. Epub 2014 Jan 21.

PMID:
24462510
[PubMed - in process]
Free Article
6.

How to perform parathyroid 4D CT: tips and traps for technique and interpretation.

Hoang JK, Sung WK, Bahl M, Phillips CD.

Radiology. 2014 Jan;270(1):15-24. doi: 10.1148/radiol.13122661. Review.

PMID:
24354373
[PubMed - indexed for MEDLINE]
7.

Chromatin connectivity maps reveal dynamic promoter-enhancer long-range associations.

Zhang Y, Wong CH, Birnbaum RY, Li G, Favaro R, Ngan CY, Lim J, Tai E, Poh HM, Wong E, Mulawadi FH, Sung WK, Nicolis S, Ahituv N, Ruan Y, Wei CL.

Nature. 2013 Dec 12;504(7479):306-10. doi: 10.1038/nature12716. Epub 2013 Nov 10.

PMID:
24213634
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

3D chromosome modeling with semi-definite programming and Hi-C data.

Zhang Z, Li G, Toh KC, Sung WK.

J Comput Biol. 2013 Nov;20(11):831-46. doi: 10.1089/cmb.2013.0076.

PMID:
24195706
[PubMed - indexed for MEDLINE]
9.

Genome-wide mutational signatures of aristolochic acid and its application as a screening tool.

Poon SL, Pang ST, McPherson JR, Yu W, Huang KK, Guan P, Weng WH, Siew EY, Liu Y, Heng HL, Chong SC, Gan A, Tay ST, Lim WK, Cutcutache I, Huang D, Ler LD, Nairismägi ML, Lee MH, Chang YH, Yu KJ, Chan-On W, Li BK, Yuan YF, Qian CN, Ng KF, Wu CF, Hsu CL, Bunte RM, Stratton MR, Futreal PA, Sung WK, Chuang CK, Ong CK, Rozen SG, Tan P, Teh BT.

Sci Transl Med. 2013 Aug 7;5(197):197ra101. doi: 10.1126/scitranslmed.3006086.

PMID:
23926199
[PubMed - indexed for MEDLINE]
10.

Whole-genome sequencing identifies recurrent mutations in hepatocellular carcinoma.

Kan Z, Zheng H, Liu X, Li S, Barber TD, Gong Z, Gao H, Hao K, Willard MD, Xu J, Hauptschein R, Rejto PA, Fernandez J, Wang G, Zhang Q, Wang B, Chen R, Wang J, Lee NP, Zhou W, Lin Z, Peng Z, Yi K, Chen S, Li L, Fan X, Yang J, Ye R, Ju J, Wang K, Estrella H, Deng S, Wei P, Qiu M, Wulur IH, Liu J, Ehsani ME, Zhang C, Loboda A, Sung WK, Aggarwal A, Poon RT, Fan ST, Wang J, Hardwick J, Reinhard C, Dai H, Li Y, Luk JM, Mao M.

Genome Res. 2013 Sep;23(9):1422-33. doi: 10.1101/gr.154492.113. Epub 2013 Jun 20.

PMID:
23788652
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Simultaneously learning DNA motif along with its position and sequence rank preferences through expectation maximization algorithm.

Zhang Z, Chang CW, Hugo W, Cheung E, Sung WK.

J Comput Biol. 2013 Mar;20(3):237-48. doi: 10.1089/cmb.2012.0233.

PMID:
23461573
[PubMed - indexed for MEDLINE]
12.

Pathogen chip for respiratory tract infections.

Simões EA, Patel C, Sung WK, Lee CW, Loh KH, Lucero M, Nohynek H, Nai G, Thien PL, Koh CW, Chan YS, Ma J, Maurer-Stroh S, Carosone-Link P, Hibberd ML, Wong CW; ARIVAC Consortium.

J Clin Microbiol. 2013 Mar;51(3):945-53. doi: 10.1128/JCM.02317-12. Epub 2013 Jan 9.

PMID:
23303493
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Whole-genome reconstruction and mutational signatures in gastric cancer.

Nagarajan N, Bertrand D, Hillmer AM, Zang ZJ, Yao F, Jacques PE, Teo AS, Cutcutache I, Zhang Z, Lee WH, Sia YY, Gao S, Ariyaratne PN, Ho A, Woo XY, Veeravali L, Ong CK, Deng N, Desai KV, Khor CC, Hibberd ML, Shahab A, Rao J, Wu M, Teh M, Zhu F, Chin SY, Pang B, So JB, Bourque G, Soong R, Sung WK, Tean Teh B, Rozen S, Ruan X, Yeoh KG, Tan PB, Ruan Y.

Genome Biol. 2012 Dec 13;13(12):R115. [Epub ahead of print]

PMID:
23237666
[PubMed - as supplied by publisher]
Free PMC Article
14.

Discovering interacting domains and motifs in protein-protein interactions.

Hugo W, Sung WK, Ng SK.

Methods Mol Biol. 2013;939:9-20. doi: 10.1007/978-1-62703-107-3_2.

PMID:
23192537
[PubMed - indexed for MEDLINE]
15.

Telomerase directly regulates NF-κB-dependent transcription.

Ghosh A, Saginc G, Leow SC, Khattar E, Shin EM, Yan TD, Wong M, Zhang Z, Li G, Sung WK, Zhou J, Chng WJ, Li S, Liu E, Tergaonkar V.

Nat Cell Biol. 2012 Dec;14(12):1270-81. doi: 10.1038/ncb2621. Epub 2012 Nov 18.

PMID:
23159929
[PubMed - indexed for MEDLINE]
16.

Large-scale functional organization of long-range chromatin interaction networks.

Sandhu KS, Li G, Poh HM, Quek YL, Sia YY, Peh SQ, Mulawadi FH, Lim J, Sikic M, Menghi F, Thalamuthu A, Sung WK, Ruan X, Fullwood MJ, Liu E, Csermely P, Ruan Y.

Cell Rep. 2012 Nov 29;2(5):1207-19. doi: 10.1016/j.celrep.2012.09.022. Epub 2012 Oct 25.

PMID:
23103170
[PubMed - indexed for MEDLINE]
Free Article
17.

BatMeth: improved mapper for bisulfite sequencing reads on DNA methylation.

Lim JQ, Tennakoon C, Li G, Wong E, Ruan Y, Wei CL, Sung WK.

Genome Biol. 2012 Oct 3;13(10):R82. [Epub ahead of print]

PMID:
23034162
[PubMed - as supplied by publisher]
Free PMC Article
18.

Long span DNA paired-end-tag (DNA-PET) sequencing strategy for the interrogation of genomic structural mutations and fusion-point-guided reconstruction of amplicons.

Yao F, Ariyaratne PN, Hillmer AM, Lee WH, Li G, Teo AS, Woo XY, Zhang Z, Chen JP, Poh WT, Zawack KF, Chan CS, Leong ST, Neo SC, Choi PS, Gao S, Nagarajan N, Thoreau H, Shahab A, Ruan X, Cacheux-Rataboul V, Wei CL, Bourque G, Sung WK, Liu ET, Ruan Y.

PLoS One. 2012;7(9):e46152. doi: 10.1371/journal.pone.0046152. Epub 2012 Sep 28.

PMID:
23029419
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Polynomial-time algorithms for building a consensus MUL-tree.

Cui Y, Jansson J, Sung WK.

J Comput Biol. 2012 Sep;19(9):1073-88. doi: 10.1089/cmb.2012.0008.

PMID:
22963134
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

ChIA-PET analysis of transcriptional chromatin interactions.

Zhang J, Poh HM, Peh SQ, Sia YY, Li G, Mulawadi FH, Goh Y, Fullwood MJ, Sung WK, Ruan X, Ruan Y.

Methods. 2012 Nov;58(3):289-99. doi: 10.1016/j.ymeth.2012.08.009. Epub 2012 Aug 25.

PMID:
22926262
[PubMed - indexed for MEDLINE]

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