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Items: 1 to 20 of 139


Pan-omics analysis of biological data.

Sung WK.

Methods. 2016 Jun 1;102:1-2. doi: 10.1016/j.ymeth.2016.05.004. Epub 2016 May 11. No abstract available.


Structural variation detection using next-generation sequencing data: A comparative technical review.

Guan P, Sung WK.

Methods. 2016 Jun 1;102:36-49. doi: 10.1016/j.ymeth.2016.01.020. Epub 2016 Feb 1. Review.


Comparison of microarray-predicted closest genomes to sequencing for poliovirus vaccine strain similarity and influenza A phylogeny.

Maurer-Stroh S, Lee CW, Patel C, Lucero M, Nohynek H, Sung WK, Murad C, Ma J, Hibberd ML, Wong CW, Simões EA.

Diagn Microbiol Infect Dis. 2016 Mar;84(3):203-6. doi: 10.1016/j.diagmicrobio.2015.11.003. Epub 2015 Nov 6.


Fibrillary glomerulonephritis combined with chronic inflammatory demyelinating polyneuropathy.

Sung WK, Jeong JU, Bang KT, Shin JH, Yoo JH, Kim NM, Park JH, Kim JH.

Kidney Res Clin Pract. 2015 Jun;34(2):117-9. doi: 10.1016/j.krcp.2014.10.008. Epub 2015 Mar 26.


An O(m log m)-Time Algorithm for Detecting Superbubbles.

Sung WK, Sadakane K, Shibuya T, Belorkar A, Pyrogova I.

IEEE/ACM Trans Comput Biol Bioinform. 2015 Jul-Aug;12(4):770-7. doi: 10.1109/TCBB.2014.2385696.


Xenopus tropicalis Genome Re-Scaffolding and Re-Annotation Reach the Resolution Required for In Vivo ChIA-PET Analysis.

Buisine N, Ruan X, Bilesimo P, Grimaldi A, Alfama G, Ariyaratne P, Mulawadi F, Chen J, Sung WK, Liu ET, Demeneix BA, Ruan Y, Sachs LM.

PLoS One. 2015 Sep 8;10(9):e0137526. doi: 10.1371/journal.pone.0137526. eCollection 2015.


BatAlign: an incremental method for accurate alignment of sequencing reads.

Lim JQ, Tennakoon C, Guan P, Sung WK.

Nucleic Acids Res. 2015 Sep 18;43(16):e107. doi: 10.1093/nar/gkv533. Epub 2015 Jul 13.


Recurrent Fusion Genes in Gastric Cancer: CLDN18-ARHGAP26 Induces Loss of Epithelial Integrity.

Yao F, Kausalya JP, Sia YY, Teo AS, Lee WH, Ong AG, Zhang Z, Tan JH, Li G, Bertrand D, Liu X, Poh HM, Guan P, Zhu F, Pathiraja TN, Ariyaratne PN, Rao J, Woo XY, Cai S, Mulawadi FH, Poh WT, Veeravalli L, Chan CS, Lim SS, Leong ST, Neo SC, Choi PS, Chew EG, Nagarajan N, Jacques PÉ, So JB, Ruan X, Yeoh KG, Tan P, Sung WK, Hunziker W, Ruan Y, Hillmer AM.

Cell Rep. 2015 Jul 14;12(2):272-85. doi: 10.1016/j.celrep.2015.06.020. Epub 2015 Jul 2.


TP53 intron 1 hotspot rearrangements are specific to sporadic osteosarcoma and can cause Li-Fraumeni syndrome.

Ribi S, Baumhoer D, Lee K, Edison, Teo AS, Madan B, Zhang K, Kohlmann WK, Yao F, Lee WH, Hoi Q, Cai S, Woo XY, Tan P, Jundt G, Smida J, Nathrath M, Sung WK, Schiffman JD, Virshup DM, Hillmer AM.

Oncotarget. 2015 Apr 10;6(10):7727-40.


Platform comparison for evaluation of ALK protein immunohistochemical expression, genomic copy number and hotspot mutation status in neuroblastomas.

Yan B, Kuick CH, Lim M, Venkataraman K, Tennakoon C, Loh E, Lian D, Leong MY, Lakshmanan M, Tergaonkar V, Sung WK, Soh SY, Chang KT.

PLoS One. 2014 Sep 4;9(9):e106575. doi: 10.1371/journal.pone.0106575. eCollection 2014.


Do triplets have enough information to construct the multi-labeled phylogenetic tree?

Hassanzadeh R, Eslahchi C, Sung WK.

PLoS One. 2014 Jul 31;9(7):e103622. doi: 10.1371/journal.pone.0103622. eCollection 2014.


CWig: compressed representation of Wiggle/BedGraph format.

Huy Hoang D, Sung WK.

Bioinformatics. 2014 Sep 15;30(18):2543-50. doi: 10.1093/bioinformatics/btu330. Epub 2014 May 27.


Genomic portrait of resectable hepatocellular carcinomas: implications of RB1 and FGF19 aberrations for patient stratification.

Ahn SM, Jang SJ, Shim JH, Kim D, Hong SM, Sung CO, Baek D, Haq F, Ansari AA, Lee SY, Chun SM, Choi S, Choi HJ, Kim J, Kim S, Hwang S, Lee YJ, Lee JE, Jung WR, Jang HY, Yang E, Sung WK, Lee NP, Mao M, Lee C, Zucman-Rossi J, Yu E, Lee HC, Kong G.

Hepatology. 2014 Dec;60(6):1972-82. doi: 10.1002/hep.27198. Epub 2014 Sep 22.


International Conference on Genome Informatics (GIW 2013) in Singapore: Introduction to the systems biology contributions.

Eisenhaber F, Sung WK, Wong L.

BMC Syst Biol. 2013;7 Suppl 6:I1. doi: 10.1186/1752-0509-7-S6-I1. Epub 2013 Dec 13. No abstract available.


The Brm-HDAC3-Erm repressor complex suppresses dedifferentiation in Drosophila type II neuroblast lineages.

Koe CT, Li S, Rossi F, Wong JJ, Wang Y, Zhang Z, Chen K, Aw SS, Richardson HE, Robson P, Sung WK, Yu F, Gonzalez C, Wang H.

Elife. 2014 Mar 11;3:e01906. doi: 10.7554/eLife.01906.


Decoding complex patterns of genomic rearrangement in hepatocellular carcinoma.

Fernandez-Banet J, Lee NP, Chan KT, Gao H, Liu X, Sung WK, Tan W, Fan ST, Poon RT, Li S, Ching K, Rejto PA, Mao M, Kan Z.

Genomics. 2014 Feb-Mar;103(2-3):189-203. doi: 10.1016/j.ygeno.2014.01.003. Epub 2014 Jan 21.


Guest Editorial for the International Conference on Genome Informatics (GIW 2013).

Eisenhaber F, Sung WK, Wong L.

IEEE/ACM Trans Comput Biol Bioinform. 2014 Jan-Feb;11(1):5-6. No abstract available.


How to perform parathyroid 4D CT: tips and traps for technique and interpretation.

Hoang JK, Sung WK, Bahl M, Phillips CD.

Radiology. 2014 Jan;270(1):15-24. doi: 10.1148/radiol.13122661. Review.


Chromatin connectivity maps reveal dynamic promoter-enhancer long-range associations.

Zhang Y, Wong CH, Birnbaum RY, Li G, Favaro R, Ngan CY, Lim J, Tai E, Poh HM, Wong E, Mulawadi FH, Sung WK, Nicolis S, Ahituv N, Ruan Y, Wei CL.

Nature. 2013 Dec 12;504(7479):306-10. doi: 10.1038/nature12716. Epub 2013 Nov 10.

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