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Items: 1 to 20 of 147

1.

Emerging concepts of data integration in pathogen phylodynamics.

Baele G, Suchard MA, Rambaut A, Lemey P.

Syst Biol. 2016 Jun 10. pii: syw054. [Epub ahead of print]

PMID:
27288481
2.

Characterizing treatment pathways at scale using the OHDSI network.

Hripcsak G, Ryan PB, Duke JD, Shah NH, Park RW, Huser V, Suchard MA, Schuemie MJ, DeFalco FJ, Perotte A, Banda JM, Reich CG, Schilling LM, Matheny ME, Meeker D, Pratt N, Madigan D.

Proc Natl Acad Sci U S A. 2016 Jun 6. pii: 201510502. [Epub ahead of print]

PMID:
27274072
3.

Bison phylogeography constrains dispersal and viability of the Ice Free Corridor in western Canada.

Heintzman PD, Froese D, Ives JW, Soares AE, Zazula GD, Letts B, Andrews TD, Driver JC, Hall E, Hare PG, Jass CN, MacKay G, Southon JR, Stiller M, Woywitka R, Suchard MA, Shapiro B.

Proc Natl Acad Sci U S A. 2016 Jun 6. pii: 201601077. [Epub ahead of print]

PMID:
27274051
4.

SpreaD3: Interactive Visualization of Spatiotemporal History and Trait Evolutionary Processes.

Bielejec F, Baele G, Vrancken B, Suchard MA, Rambaut A, Lemey P.

Mol Biol Evol. 2016 Apr 23. pii: msw082. [Epub ahead of print]

PMID:
27189542
5.

ASSESSING PHENOTYPIC CORRELATION THROUGH THE MULTIVARIATE PHYLOGENETIC LATENT LIABILITY MODEL.

Cybis GB, Sinsheimer JS, Bedford T, Mather AE, Lemey P, Suchard MA.

Ann Appl Stat. 2015 Jun;9(2):969-991.

6.

Quantifying and Mitigating the Effect of Preferential Sampling on Phylodynamic Inference.

Karcher MD, Palacios JA, Bedford T, Suchard MA, Minin VN.

PLoS Comput Biol. 2016 Mar 3;12(3):e1004789. doi: 10.1371/journal.pcbi.1004789. eCollection 2016 Mar.

7.

Pioglitazone Use and Risk of Bladder Cancer.

Singh S, Suchard MA.

JAMA. 2015 Dec 15;314(23):2567-8. doi: 10.1001/jama.2015.13912. No abstract available.

PMID:
26670976
8.

Genealogical Working Distributions for Bayesian Model Testing with Phylogenetic Uncertainty.

Baele G, Lemey P, Suchard MA.

Syst Biol. 2016 Mar;65(2):250-64. doi: 10.1093/sysbio/syv083. Epub 2015 Nov 1.

PMID:
26526428
9.
10.

Contribution of Epidemiological Predictors in Unraveling the Phylogeographic History of HIV-1 Subtype C in Brazil.

Gräf T, Vrancken B, Maletich Junqueira D, de Medeiros RM, Suchard MA, Lemey P, Esteves de Matos Almeida S, Pinto AR.

J Virol. 2015 Dec;89(24):12341-8. doi: 10.1128/JVI.01681-15. Epub 2015 Sep 30.

11.

Assessing transmissibility of HIV-1 drug resistance mutations from treated and from drug-naive individuals.

Winand R, Theys K, Eusébio M, Aerts J, Camacho RJ, Gomes P, Suchard MA, Vandamme AM, Abecasis AB; Portuguese HIV-1 Resistance Study Group.

AIDS. 2015 Sep 24;29(15):2045-52. doi: 10.1097/QAD.0000000000000811. Erratum in: AIDS. 2016 Feb 20;30(4):679.

12.

Bayesian Inference Reveals Host-Specific Contributions to the Epidemic Expansion of Influenza A H5N1.

Trovão NS, Suchard MA, Baele G, Gilbert M, Lemey P.

Mol Biol Evol. 2015 Dec;32(12):3264-75. doi: 10.1093/molbev/msv185. Epub 2015 Sep 3.

PMID:
26341298
13.

Positive Selection in CD8+ T-Cell Epitopes of Influenza Virus Nucleoprotein Revealed by a Comparative Analysis of Human and Swine Viral Lineages.

Machkovech HM, Bedford T, Suchard MA, Bloom JD.

J Virol. 2015 Nov;89(22):11275-83. doi: 10.1128/JVI.01571-15. Epub 2015 Aug 26.

14.

Analysis of Viral Genetics for Estimating Diffusion of Influenza A H6N1.

Scotch M, Suchard MA, Rabinowitz PM.

AMIA Jt Summits Transl Sci Proc. 2015 Mar 23;2015:36-40. eCollection 2015.

15.

Observational Health Data Sciences and Informatics (OHDSI): Opportunities for Observational Researchers.

Hripcsak G, Duke JD, Shah NH, Reich CG, Huser V, Schuemie MJ, Suchard MA, Park RW, Wong IC, Rijnbeek PR, van der Lei J, Pratt N, Norén GN, Li YC, Stang PE, Madigan D, Ryan PB.

Stud Health Technol Inform. 2015;216:574-8.

16.

Disentangling the impact of within-host evolution and transmission dynamics on the tempo of HIV-1 evolution.

Vrancken B, Baele G, Vandamme AM, van Laethem K, Suchard MA, Lemey P.

AIDS. 2015 Jul 31;29(12):1549-56. doi: 10.1097/QAD.0000000000000731.

PMID:
26244394
17.

Global circulation patterns of seasonal influenza viruses vary with antigenic drift.

Bedford T, Riley S, Barr IG, Broor S, Chadha M, Cox NJ, Daniels RS, Gunasekaran CP, Hurt AC, Kelso A, Klimov A, Lewis NS, Li X, McCauley JW, Odagiri T, Potdar V, Rambaut A, Shu Y, Skepner E, Smith DJ, Suchard MA, Tashiro M, Wang D, Xu X, Lemey P, Russell CA.

Nature. 2015 Jul 9;523(7559):217-20. doi: 10.1038/nature14460. Epub 2015 Jun 8.

18.

Global migration of influenza A viruses in swine.

Nelson MI, Viboud C, Vincent AL, Culhane MR, Detmer SE, Wentworth DE, Rambaut A, Suchard MA, Holmes EC, Lemey P.

Nat Commun. 2015 Mar 27;6:6696. doi: 10.1038/ncomms7696.

19.

Simultaneously estimating evolutionary history and repeated traits phylogenetic signal: applications to viral and host phenotypic evolution.

Vrancken B, Lemey P, Rambaut A, Bedford T, Longdon B, Günthard HF, Suchard MA.

Methods Ecol Evol. 2015 Jan 1;6(1):67-82.

20.

Generalized linear models for identifying predictors of the evolutionary diffusion of viruses.

Beard R, Magee D, Suchard MA, Lemey P, Scotch M.

AMIA Jt Summits Transl Sci Proc. 2014 Apr 7;2014:23-8. eCollection 2014.

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