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Results: 12

1.

Siphons in chemical reaction networks.

Shiu A, Sturmfels B.

Bull Math Biol. 2010 Aug;72(6):1448-63. doi: 10.1007/s11538-010-9502-y. Epub 2010 Jan 21.

PMID:
20091352
[PubMed - indexed for MEDLINE]
2.

Reconstructing spatiotemporal gene expression data from partial observations.

Cartwright DA, Brady SM, Orlando DA, Sturmfels B, Benfey PN.

Bioinformatics. 2009 Oct 1;25(19):2581-7. doi: 10.1093/bioinformatics/btp437. Epub 2009 Jul 16.

PMID:
19608707
[PubMed - indexed for MEDLINE]
Free Article
3.

Comparison of pattern detection methods in microarray time series of the segmentation clock.

Dequéant ML, Ahnert S, Edelsbrunner H, Fink TM, Glynn EF, Hattem G, Kudlicki A, Mileyko Y, Morton J, Mushegian AR, Pachter L, Rowicka M, Shiu A, Sturmfels B, Pourquié O.

PLoS One. 2008 Aug 6;3(8):e2856. doi: 10.1371/journal.pone.0002856.

PMID:
18682743
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Toward the human genotope.

Huggins P, Pachter L, Sturmfels B.

Bull Math Biol. 2007 Nov;69(8):2723-35. Epub 2007 Sep 15.

PMID:
17874271
[PubMed - indexed for MEDLINE]
5.

The cyclohedron test for finding periodic genes in time course expression studies.

Morton J, Pachter L, Shiu A, Sturmfels B.

Stat Appl Genet Mol Biol. 2007;6:Article 21. Epub 2007 Aug 15.

PMID:
17764440
[PubMed - indexed for MEDLINE]
6.

Analysis of epistatic interactions and fitness landscapes using a new geometric approach.

Beerenwinkel N, Pachter L, Sturmfels B, Elena SF, Lenski RE.

BMC Evol Biol. 2007 Apr 13;7:60.

PMID:
17433106
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Parametric alignment of Drosophila genomes.

Dewey CN, Huggins PM, Woods K, Sturmfels B, Pachter L.

PLoS Comput Biol. 2006 Jun 23;2(6):e73. Epub 2006 Jun 23.

PMID:
16789815
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Evolution on distributive lattices.

Beerenwinkel N, Eriksson N, Sturmfels B.

J Theor Biol. 2006 Sep 21;242(2):409-20. Epub 2006 May 2.

PMID:
16650439
[PubMed - indexed for MEDLINE]
9.

Toric ideals of phylogenetic invariants.

Sturmfels B, Sullivant S.

J Comput Biol. 2005 May;12(4):457-81. Review.

PMID:
15882142
[PubMed - indexed for MEDLINE]
10.

Toric ideals of phylogenetic invariants.

Sturmfels B, Sullivant S.

J Comput Biol. 2005 Mar;12(2):204-28.

PMID:
15767777
[PubMed - indexed for MEDLINE]
11.

Tropical geometry of statistical models.

Pachter L, Sturmfels B.

Proc Natl Acad Sci U S A. 2004 Nov 16;101(46):16132-7. Epub 2004 Nov 8.

PMID:
15534224
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Parametric inference for biological sequence analysis.

Pachter L, Sturmfels B.

Proc Natl Acad Sci U S A. 2004 Nov 16;101(46):16138-43. Epub 2004 Nov 8.

PMID:
15534223
[PubMed - indexed for MEDLINE]
Free PMC Article

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