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Results: 1 to 20 of 36

1.

Genome-wide identification and characterization of functional neuronal activity-dependent enhancers.

Malik AN, Vierbuchen T, Hemberg M, Rubin AA, Ling E, Couch CH, Stroud H, Spiegel I, Farh KK, Harmin DA, Greenberg ME.

Nat Neurosci. 2014 Sep 7. doi: 10.1038/nn.3808. [Epub ahead of print]

PMID:
25195102
[PubMed - as supplied by publisher]
2.

The histone variant H2A.W defines heterochromatin and promotes chromatin condensation in Arabidopsis.

Yelagandula R, Stroud H, Holec S, Zhou K, Feng S, Zhong X, Muthurajan UM, Nie X, Kawashima T, Groth M, Luger K, Jacobsen SE, Berger F.

Cell. 2014 Jul 3;158(1):98-109. doi: 10.1016/j.cell.2014.06.006.

PMID:
24995981
[PubMed - indexed for MEDLINE]
3.

Transcriptional gene silencing by Arabidopsis microrchidia homologues involves the formation of heteromers.

Moissiard G, Bischof S, Husmann D, Pastor WA, Hale CJ, Yen L, Stroud H, Papikian A, Vashisht AA, Wohlschlegel JA, Jacobsen SE.

Proc Natl Acad Sci U S A. 2014 May 20;111(20):7474-9. doi: 10.1073/pnas.1406611111. Epub 2014 May 5.

PMID:
24799676
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis.

Stroud H, Do T, Du J, Zhong X, Feng S, Johnson L, Patel DJ, Jacobsen SE.

Nat Struct Mol Biol. 2014 Jan;21(1):64-72. doi: 10.1038/nsmb.2735. Epub 2013 Dec 15.

PMID:
24336224
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

RNA interference knockdown of DNA methyl-transferase 3 affects gene alternative splicing in the honey bee.

Li-Byarlay H, Li Y, Stroud H, Feng S, Newman TC, Kaneda M, Hou KK, Worley KC, Elsik CG, Wickline SA, Jacobsen SE, Ma J, Robinson GE.

Proc Natl Acad Sci U S A. 2013 Jul 30;110(31):12750-5. doi: 10.1073/pnas.1310735110. Epub 2013 Jul 12.

PMID:
23852726
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Plants regenerated from tissue culture contain stable epigenome changes in rice.

Stroud H, Ding B, Simon SA, Feng S, Bellizzi M, Pellegrini M, Wang GL, Meyers BC, Jacobsen SE.

Elife. 2013 Mar 19;2:e00354. doi: 10.7554/eLife.00354.

PMID:
23539454
[PubMed - in process]
Free PMC Article
7.

A matrix protein silences transposons and repeats through interaction with retinoblastoma-associated proteins.

Xu Y, Wang Y, Stroud H, Gu X, Sun B, Gan ES, Ng KH, Jacobsen SE, He Y, Ito T.

Curr Biol. 2013 Feb 18;23(4):345-50. doi: 10.1016/j.cub.2013.01.030. Epub 2013 Feb 7.

PMID:
23394836
[PubMed - indexed for MEDLINE]
Free Article
8.

Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome.

Stroud H, Greenberg MV, Feng S, Bernatavichute YV, Jacobsen SE.

Cell. 2013 Jan 17;152(1-2):352-64. doi: 10.1016/j.cell.2012.10.054. Epub 2013 Jan 11.

PMID:
23313553
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Loss of the DNA methyltransferase MET1 Induces H3K9 hypermethylation at PcG target genes and redistribution of H3K27 trimethylation to transposons in Arabidopsis thaliana.

Deleris A, Stroud H, Bernatavichute Y, Johnson E, Klein G, Schubert D, Jacobsen SE.

PLoS Genet. 2012;8(11):e1003062. doi: 10.1371/journal.pgen.1003062. Epub 2012 Nov 29.

PMID:
23209430
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

The SET-domain protein SUVR5 mediates H3K9me2 deposition and silencing at stimulus response genes in a DNA methylation-independent manner.

Caro E, Stroud H, Greenberg MV, Bernatavichute YV, Feng S, Groth M, Vashisht AA, Wohlschlegel J, Jacobsen SE.

PLoS Genet. 2012;8(10):e1002995. doi: 10.1371/journal.pgen.1002995. Epub 2012 Oct 11.

PMID:
23071452
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Dual binding of chromomethylase domains to H3K9me2-containing nucleosomes directs DNA methylation in plants.

Du J, Zhong X, Bernatavichute YV, Stroud H, Feng S, Caro E, Vashisht AA, Terragni J, Chin HG, Tu A, Hetzel J, Wohlschlegel JA, Pradhan S, Patel DJ, Jacobsen SE.

Cell. 2012 Sep 28;151(1):167-80. doi: 10.1016/j.cell.2012.07.034.

PMID:
23021223
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

DNA methyltransferases are required to induce heterochromatic re-replication in Arabidopsis.

Stroud H, Hale CJ, Feng S, Caro E, Jacob Y, Michaels SD, Jacobsen SE.

PLoS Genet. 2012 Jul;8(7):e1002808. doi: 10.1371/journal.pgen.1002808. Epub 2012 Jul 5.

PMID:
22792077
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

MORC family ATPases required for heterochromatin condensation and gene silencing.

Moissiard G, Cokus SJ, Cary J, Feng S, Billi AC, Stroud H, Husmann D, Zhan Y, Lajoie BR, McCord RP, Hale CJ, Feng W, Michaels SD, Frand AR, Pellegrini M, Dekker J, Kim JK, Jacobsen SE.

Science. 2012 Jun 15;336(6087):1448-51. doi: 10.1126/science.1221472. Epub 2012 May 3.

PMID:
22555433
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Histone methyltransferases regulating rRNA gene dose and dosage control in Arabidopsis.

Pontvianne F, Blevins T, Chandrasekhara C, Feng W, Stroud H, Jacobsen SE, Michaels SD, Pikaard CS.

Genes Dev. 2012 May 1;26(9):945-57. doi: 10.1101/gad.182865.111.

PMID:
22549957
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Genome-wide analysis of histone H3.1 and H3.3 variants in Arabidopsis thaliana.

Stroud H, Otero S, Desvoyes B, Ramírez-Parra E, Jacobsen SE, Gutierrez C.

Proc Natl Acad Sci U S A. 2012 Apr 3;109(14):5370-5. doi: 10.1073/pnas.1203145109. Epub 2012 Mar 19.

PMID:
22431625
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

5-Hydroxymethylcytosine is associated with enhancers and gene bodies in human embryonic stem cells.

Stroud H, Feng S, Morey Kinney S, Pradhan S, Jacobsen SE.

Genome Biol. 2011 Jun 20;12(6):R54. doi: 10.1186/gb-2011-12-6-r54.

PMID:
21689397
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Tissue-specific distribution and dynamic changes of 5-hydroxymethylcytosine in mammalian genomes.

Kinney SM, Chin HG, Vaisvila R, Bitinaite J, Zheng Y, Estève PO, Feng S, Stroud H, Jacobsen SE, Pradhan S.

J Biol Chem. 2011 Jul 15;286(28):24685-93. doi: 10.1074/jbc.M110.217083. Epub 2011 May 24.

PMID:
21610077
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Genome-wide mapping of Arabidopsis thaliana origins of DNA replication and their associated epigenetic marks.

Costas C, de la Paz Sanchez M, Stroud H, Yu Y, Oliveros JC, Feng S, Benguria A, López-Vidriero I, Zhang X, Solano R, Jacobsen SE, Gutierrez C.

Nat Struct Mol Biol. 2011 Mar;18(3):395-400. doi: 10.1038/nsmb.1988. Epub 2011 Feb 6.

PMID:
21297636
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Regulation of heterochromatic DNA replication by histone H3 lysine 27 methyltransferases.

Jacob Y, Stroud H, Leblanc C, Feng S, Zhuo L, Caro E, Hassel C, Gutierrez C, Michaels SD, Jacobsen SE.

Nature. 2010 Aug 19;466(7309):987-91. doi: 10.1038/nature09290. Epub 2010 Jul 14.

PMID:
20631708
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Relationship between nucleosome positioning and DNA methylation.

Chodavarapu RK, Feng S, Bernatavichute YV, Chen PY, Stroud H, Yu Y, Hetzel JA, Kuo F, Kim J, Cokus SJ, Casero D, Bernal M, Huijser P, Clark AT, Krämer U, Merchant SS, Zhang X, Jacobsen SE, Pellegrini M.

Nature. 2010 Jul 15;466(7304):388-92. doi: 10.1038/nature09147. Epub 2010 May 30.

PMID:
20512117
[PubMed - indexed for MEDLINE]
Free PMC Article

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