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Results: 1 to 20 of 31

1.

A novel algorithm for simultaneous SNP selection in high-dimensional genome-wide association studies.

Zuber V, Duarte Silva AP, Strimmer K.

BMC Bioinformatics. 2012 Oct 31;13:284. doi: 10.1186/1471-2105-13-284.

PMID:
23113980
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Signal identification for rare and weak features: higher criticism or false discovery rates?

Klaus B, Strimmer K.

Biostatistics. 2013 Jan;14(1):129-43. doi: 10.1093/biostatistics/kxs030. Epub 2012 Sep 6.

PMID:
22962499
[PubMed - indexed for MEDLINE]
3.

MALDIquant: a versatile R package for the analysis of mass spectrometry data.

Gibb S, Strimmer K.

Bioinformatics. 2012 Sep 1;28(17):2270-1. doi: 10.1093/bioinformatics/bts447. Epub 2012 Jul 12.

PMID:
22796955
[PubMed - indexed for MEDLINE]
Free Article
4.

Over-optimism in bioinformatics: an illustration.

Jelizarow M, Guillemot V, Tenenhaus A, Strimmer K, Boulesteix AL.

Bioinformatics. 2010 Aug 15;26(16):1990-8. doi: 10.1093/bioinformatics/btq323. Epub 2010 Jun 26.

PMID:
20581402
[PubMed - indexed for MEDLINE]
Free Article
5.

Gene ranking and biomarker discovery under correlation.

Zuber V, Strimmer K.

Bioinformatics. 2009 Oct 15;25(20):2700-7. doi: 10.1093/bioinformatics/btp460. Epub 2009 Jul 30.

PMID:
19648135
[PubMed - indexed for MEDLINE]
Free Article
6.

A general modular framework for gene set enrichment analysis.

Ackermann M, Strimmer K.

BMC Bioinformatics. 2009 Feb 3;10:47. doi: 10.1186/1471-2105-10-47.

PMID:
19192285
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

A unified approach to false discovery rate estimation.

Strimmer K.

BMC Bioinformatics. 2008 Jul 9;9:303. doi: 10.1186/1471-2105-9-303.

PMID:
18613966
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

fdrtool: a versatile R package for estimating local and tail area-based false discovery rates.

Strimmer K.

Bioinformatics. 2008 Jun 15;24(12):1461-2. doi: 10.1093/bioinformatics/btn209. Epub 2008 Apr 25.

PMID:
18441000
[PubMed - indexed for MEDLINE]
Free Article
9.

Therapeutic vaccination reduces HIV sequence variability.

Hoffmann D, Seebach J, Cosma A, Goebel FD, Strimmer K, Schätzl HM, Erfle V.

FASEB J. 2008 Feb;22(2):437-44. Epub 2007 Oct 10.

PMID:
17932027
[PubMed - indexed for MEDLINE]
Free Article
10.
11.

Learning causal networks from systems biology time course data: an effective model selection procedure for the vector autoregressive process.

Opgen-Rhein R, Strimmer K.

BMC Bioinformatics. 2007 May 3;8 Suppl 2:S3.

PMID:
17493252
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Accurate ranking of differentially expressed genes by a distribution-free shrinkage approach.

Opgen-Rhein R, Strimmer K.

Stat Appl Genet Mol Biol. 2007;6:Article9. Epub 2007 Feb 23.

PMID:
17402924
[PubMed - indexed for MEDLINE]
13.

Partial least squares: a versatile tool for the analysis of high-dimensional genomic data.

Boulesteix AL, Strimmer K.

Brief Bioinform. 2007 Jan;8(1):32-44. Epub 2006 May 26. Review.

PMID:
16772269
[PubMed - indexed for MEDLINE]
Free Article
14.

A shrinkage approach to large-scale covariance matrix estimation and implications for functional genomics.

Schäfer J, Strimmer K.

Stat Appl Genet Mol Biol. 2005;4:Article32. Epub 2005 Nov 14.

PMID:
16646851
[PubMed]
15.

Predicting transcription factor activities from combined analysis of microarray and ChIP data: a partial least squares approach.

Boulesteix AL, Strimmer K.

Theor Biol Med Model. 2005 Jun 24;2:23.

PMID:
15978125
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Inference of demographic history from genealogical trees using reversible jump Markov chain Monte Carlo.

Opgen-Rhein R, Fahrmeir L, Strimmer K.

BMC Evol Biol. 2005 Jan 21;5:6.

PMID:
15663782
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

An empirical Bayes approach to inferring large-scale gene association networks.

Schäfer J, Strimmer K.

Bioinformatics. 2005 Mar;21(6):754-64. Epub 2004 Oct 12.

PMID:
15479708
[PubMed - indexed for MEDLINE]
Free Article
18.

TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics.

Jobb G, von Haeseler A, Strimmer K.

BMC Evol Biol. 2004 Jun 28;4:18.

PMID:
15222900
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

APE: Analyses of Phylogenetics and Evolution in R language.

Paradis E, Claude J, Strimmer K.

Bioinformatics. 2004 Jan 22;20(2):289-90.

PMID:
14734327
[PubMed - indexed for MEDLINE]
Free Article
20.

Identifying periodically expressed transcripts in microarray time series data.

Wichert S, Fokianos K, Strimmer K.

Bioinformatics. 2004 Jan 1;20(1):5-20.

PMID:
14693803
[PubMed - indexed for MEDLINE]
Free Article

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