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Results: 1 to 20 of 177

1.

Structural studies of postentry restriction factors reveal antiparallel dimers that enable avid binding to the HIV-1 capsid lattice.

Goldstone DC, Walker PA, Calder LJ, Coombs PJ, Kirkpatrick J, Ball NJ, Hilditch L, Yap MW, Rosenthal PB, Stoye JP, Taylor IA.

Proc Natl Acad Sci U S A. 2014 Jul 1;111(26):9609-14. doi: 10.1073/pnas.1402448111. Epub 2014 Jun 16.

PMID:
24979782
[PubMed - in process]
2.

ReadXplorer-visualization and analysis of mapped sequences.

Hilker R, Stadermann KB, Doppmeier D, Kalinowski J, Stoye J, Straube J, Winnebald J, Goesmann A.

Bioinformatics. 2014 Apr 30. pii: btu205. [Epub ahead of print]

PMID:
24790157
[PubMed - as supplied by publisher]
Free Article
3.

Mycoplasma salivarium as a dominant coloniser of Fanconi anaemia associated oral carcinoma.

Henrich B, Rumming M, Sczyrba A, Velleuer E, Dietrich R, Gerlach W, Gombert M, Rahn S, Stoye J, Borkhardt A, Fischer U.

PLoS One. 2014 Mar 18;9(3):e92297. doi: 10.1371/journal.pone.0092297. eCollection 2014.

PMID:
24642836
[PubMed - in process]
Free PMC Article
4.

Improving the genome annotation of the acarbose producer Actinoplanes sp. SE50/110 by sequencing enriched 5'-ends of primary transcripts.

Schwientek P, Neshat A, Kalinowski J, Klein A, Rückert C, Schneiker-Bekel S, Wendler S, Stoye J, Pühler A.

J Biotechnol. 2014 Mar 15. pii: S0168-1656(14)00116-3. doi: 10.1016/j.jbiotec.2014.03.013. [Epub ahead of print]

PMID:
24642337
[PubMed - as supplied by publisher]
5.

Evolution of the retroviral restriction gene Fv1: inhibition of non-MLV retroviruses.

Yap MW, Colbeck E, Ellis SA, Stoye JP.

PLoS Pathog. 2014 Mar 6;10(3):e1003968. doi: 10.1371/journal.ppat.1003968. eCollection 2014 Mar.

PMID:
24603659
[PubMed - in process]
Free PMC Article
6.

Statistics for approximate gene clusters.

Jahn K, Winter S, Stoye J, Böcker S.

BMC Bioinformatics. 2013;14 Suppl 15:S14. doi: 10.1186/1471-2105-14-S15-S14. Epub 2013 Dec 13.

PMID:
24564620
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

On the inversion-indel distance.

Willing E, Zaccaria S, Braga MD, Stoye J.

BMC Bioinformatics. 2013;14 Suppl 15:S3. doi: 10.1186/1471-2105-14-S15-S3. Epub 2013 Oct 15.

PMID:
24564182
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

BiPACE 2D--graph-based multiple alignment for comprehensive 2D gas chromatography-mass spectrometry.

Hoffmann N, Wilhelm M, Doebbe A, Niehaus K, Stoye J.

Bioinformatics. 2014 Apr 1;30(7):988-95. doi: 10.1093/bioinformatics/btt738. Epub 2013 Dec 20.

PMID:
24363380
[PubMed - indexed for MEDLINE]
9.

Structural basis of lentiviral subversion of a cellular protein degradation pathway.

Schwefel D, Groom HC, Boucherit VC, Christodoulou E, Walker PA, Stoye JP, Bishop KN, Taylor IA.

Nature. 2014 Jan 9;505(7482):234-8. doi: 10.1038/nature12815. Epub 2013 Dec 15.

PMID:
24336198
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Capsid-binding retrovirus restriction factors: discovery, restriction specificity and implications for the development of novel therapeutics.

Sanz-Ramos M, Stoye JP.

J Gen Virol. 2013 Dec;94(Pt 12):2587-98. doi: 10.1099/vir.0.058180-0. Epub 2013 Sep 11. Review.

PMID:
24026671
[PubMed - indexed for MEDLINE]
11.

Apparent effect of rabbit endogenous lentivirus type K acquisition on retrovirus restriction by lagomorph Trim5αs.

Yap MW, Stoye JP.

Philos Trans R Soc Lond B Biol Sci. 2013 Aug 12;368(1626):20120498. doi: 10.1098/rstb.2012.0498. Print 2013 Sep 19.

PMID:
23938750
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Are human endogenous retroviruses pathogenic? An approach to testing the hypothesis.

Young GR, Stoye JP, Kassiotis G.

Bioessays. 2013 Sep;35(9):794-803. doi: 10.1002/bies.201300049. Epub 2013 Jul 17. Review.

PMID:
23864388
[PubMed - indexed for MEDLINE]
13.

metaBEETL: high-throughput analysis of heterogeneous microbial populations from shotgun DNA sequences.

Ander C, Schulz-Trieglaff OB, Stoye J, Cox AJ.

BMC Bioinformatics. 2013;14 Suppl 5:S2. doi: 10.1186/1471-2105-14-S5-S2. Epub 2013 Apr 10.

PMID:
23734710
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Next-generation-sequencing-spectratyping reveals public T-cell receptor repertoires in pediatric very severe aplastic anemia and identifies a β chain CDR3 sequence associated with hepatitis-induced pathogenesis.

Krell PF, Reuther S, Fischer U, Keller T, Weber S, Gombert M, Schuster FR, Asang C, Stepensky P, Strahm B, Meisel R, Stoye J, Borkhardt A.

Haematologica. 2013 Sep;98(9):1388-96. doi: 10.3324/haematol.2012.069708. Epub 2013 May 28.

PMID:
23716544
[PubMed - in process]
Free PMC Article
15.

Virology. Our viral inheritance.

Weiss RA, Stoye JP.

Science. 2013 May 17;340(6134):820-1. doi: 10.1126/science.1235148. No abstract available.

PMID:
23687035
[PubMed - indexed for MEDLINE]
16.

A unique spumavirus Gag N-terminal domain with functional properties of orthoretroviral matrix and capsid.

Goldstone DC, Flower TG, Ball NJ, Sanz-Ramos M, Yap MW, Ogrodowicz RW, Stanke N, Reh J, Lindemann D, Stoye JP, Taylor IA.

PLoS Pathog. 2013 May;9(5):e1003376. doi: 10.1371/journal.ppat.1003376. Epub 2013 May 9.

PMID:
23675305
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Updating benchtop sequencing performance comparison.

Jünemann S, Sedlazeck FJ, Prior K, Albersmeier A, John U, Kalinowski J, Mellmann A, Goesmann A, von Haeseler A, Stoye J, Harmsen D.

Nat Biotechnol. 2013 Apr;31(4):294-6. doi: 10.1038/nbt.2522. No abstract available. Erratum in: Nat Biotechnol. 2013 Dec;31(12):1148.

PMID:
23563421
[PubMed - indexed for MEDLINE]
18.

A comparison of murine leukemia viruses that escape from human and rhesus macaque TRIM5αs.

Ohkura S, Stoye JP.

J Virol. 2013 Jun;87(11):6455-68. doi: 10.1128/JVI.03425-12. Epub 2013 Mar 27.

PMID:
23536686
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Multiple genome comparison based on overlap regions of pairwise local alignments.

Jahn K, Sudek H, Stoye J.

BMC Bioinformatics. 2012;13 Suppl 19:S7. doi: 10.1186/1471-2105-13-S19-S7. Epub 2012 Dec 19.

PMID:
23281942
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Gene family assignment-free comparative genomics.

Doerr D, Thévenin A, Stoye J.

BMC Bioinformatics. 2012;13 Suppl 19:S3. doi: 10.1186/1471-2105-13-S19-S3. Epub 2012 Dec 19.

PMID:
23281826
[PubMed - indexed for MEDLINE]
Free PMC Article

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