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Results: 1 to 20 of 72

1.

Mitochondriome and cholangiocellular carcinoma.

Bahitham W, Liao X, Peng F, Bamforth F, Chan A, Mason A, Stone B, Stothard P, Sergi C.

PLoS One. 2014 Aug 19;9(8):e104694. doi: 10.1371/journal.pone.0104694. eCollection 2014.

PMID:
25137133
[PubMed - in process]
Free PMC Article
2.

Sequence, structural and expression divergence of duplicate genes in the bovine genome.

Liao X, Bao H, Meng Y, Plastow G, Moore S, Stothard P.

PLoS One. 2014 Jul 23;9(7):e102868. doi: 10.1371/journal.pone.0102868. eCollection 2014.

PMID:
25054921
[PubMed - in process]
Free PMC Article
3.

Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle.

Daetwyler HD, Capitan A, Pausch H, Stothard P, van Binsbergen R, Brøndum RF, Liao X, Djari A, Rodriguez SC, Grohs C, Esquerré D, Bouchez O, Rossignol MN, Klopp C, Rocha D, Fritz S, Eggen A, Bowman PJ, Coote D, Chamberlain AJ, Anderson C, VanTassell CP, Hulsegge I, Goddard ME, Guldbrandtsen B, Lund MS, Veerkamp RF, Boichard DA, Fries R, Hayes BJ.

Nat Genet. 2014 Aug;46(8):858-65. doi: 10.1038/ng.3034. Epub 2014 Jul 13.

PMID:
25017103
[PubMed - in process]
4.

Whole-genome analyses of Korean native and Holstein cattle breeds by massively parallel sequencing.

Choi JW, Liao X, Stothard P, Chung WH, Jeon HJ, Miller SP, Choi SY, Lee JK, Yang B, Lee KT, Han KJ, Kim HC, Jeong D, Oh JD, Kim N, Kim TH, Lee HK, Lee SJ.

PLoS One. 2014 Jul 3;9(7):e101127. doi: 10.1371/journal.pone.0101127. eCollection 2014.

PMID:
24992012
[PubMed - in process]
Free PMC Article
5.

Gene co-expression network analysis identifies porcine genes associated with variation in Salmonella shedding.

Kommadath A, Bao H, Arantes AS, Plastow GS, Tuggle CK, Bearson SM, Guan le L, Stothard P.

BMC Genomics. 2014 Jun 9;15:452. doi: 10.1186/1471-2164-15-452.

PMID:
24912583
[PubMed - in process]
Free PMC Article
6.

MicroRNA buffering and altered variance of gene expression in response to Salmonella infection.

Bao H, Kommadath A, Plastow GS, Tuggle CK, Guan le L, Stothard P.

PLoS One. 2014 Apr 9;9(4):e94352. doi: 10.1371/journal.pone.0094352. eCollection 2014.

PMID:
24718561
[PubMed - in process]
Free PMC Article
7.

Potential regulatory role of microRNAs in the development of bovine gastrointestinal tract during early life.

Liang G, Malmuthuge N, McFadden TB, Bao H, Griebel PJ, Stothard P, Guan le L.

PLoS One. 2014 Mar 28;9(3):e92592. doi: 10.1371/journal.pone.0092592. eCollection 2014.

PMID:
24682221
[PubMed - in process]
Free PMC Article
8.

Characterization of the altered gene expression profile in early porcine embryos generated from parthenogenesis and somatic cell chromatin transfer.

Zhou C, Dobrinsky J, Tsoi S, Foxcroft GR, Dixon WT, Stothard P, Verstegen J, Dyck MK.

PLoS One. 2014 Mar 14;9(3):e91728. doi: 10.1371/journal.pone.0091728. eCollection 2014.

PMID:
24633136
[PubMed - in process]
Free PMC Article
9.

Single nucleotide polymorphisms for feed efficiency and performance in crossbred beef cattle.

Abo-Ismail MK, Vander Voort G, Squires JJ, Swanson KC, Mandell IB, Liao X, Stothard P, Moore S, Plastow G, Miller SP.

BMC Genet. 2014 Jan 30;15:14. doi: 10.1186/1471-2156-15-14.

PMID:
24476087
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Whole genome sequencing of Gir cattle for identifying polymorphisms and loci under selection.

Liao X, Peng F, Forni S, McLaren D, Plastow G, Stothard P.

Genome. 2013 Oct;56(10):592-8. doi: 10.1139/gen-2013-0082. Epub 2013 Aug 2.

PMID:
24237340
[PubMed - indexed for MEDLINE]
Free Article
11.

Genomic analyses identify distinct patterns of selection in domesticated pigs and Tibetan wild boars.

Li M, Tian S, Jin L, Zhou G, Li Y, Zhang Y, Wang T, Yeung CK, Chen L, Ma J, Zhang J, Jiang A, Li J, Zhou C, Zhang J, Liu Y, Sun X, Zhao H, Niu Z, Lou P, Xian L, Shen X, Liu S, Zhang S, Zhang M, Zhu L, Shuai S, Bai L, Tang G, Liu H, Jiang Y, Mai M, Xiao J, Wang X, Zhou Q, Wang Z, Stothard P, Xue M, Gao X, Luo Z, Gu Y, Zhu H, Hu X, Zhao Y, Plastow GS, Wang J, Jiang Z, Li K, Li N, Li X, Li R.

Nat Genet. 2013 Dec;45(12):1431-8. doi: 10.1038/ng.2811. Epub 2013 Oct 27.

PMID:
24162736
[PubMed - indexed for MEDLINE]
12.

Expansion of ruminant-specific microRNAs shapes target gene expression divergence between ruminant and non-ruminant species.

Bao H, Kommadath A, Sun X, Meng Y, Arantes AS, Plastow GS, Guan le L, Stothard P.

BMC Genomics. 2013 Sep 10;14:609. doi: 10.1186/1471-2164-14-609.

PMID:
24020371
[PubMed - in process]
Free PMC Article
13.

Massively parallel sequencing of Chikso (Korean brindle cattle) to discover genome-wide SNPs and InDels.

Choi JW, Liao X, Park S, Jeon HJ, Chung WH, Stothard P, Park YS, Lee JK, Lee KT, Kim SH, Oh JD, Kim N, Kim TH, Lee HK, Lee SJ.

Mol Cells. 2013 Sep;36(3):203-11. doi: 10.1007/s10059-013-2347-0. Epub 2013 Aug 1.

PMID:
23912596
[PubMed - indexed for MEDLINE]
Free Article
14.

Whole-genome resequencing of Hanwoo (Korean cattle) and insight into regions of homozygosity.

Lee KT, Chung WH, Lee SY, Choi JW, Kim J, Lim D, Lee S, Jang GW, Kim B, Choy YH, Liao X, Stothard P, Moore SS, Lee SH, Ahn S, Kim N, Kim TH.

BMC Genomics. 2013 Jul 30;14:519. doi: 10.1186/1471-2164-14-519.

PMID:
23899338
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Candidate genes and single nucleotide polymorphisms associated with variation in residual feed intake in beef cattle.

Karisa BK, Thomson J, Wang Z, Stothard P, Moore SS, Plastow GS.

J Anim Sci. 2013 Aug;91(8):3502-13. doi: 10.2527/jas.2012-6170. Epub 2013 Jun 4.

PMID:
23736061
[PubMed - indexed for MEDLINE]
Free Article
16.

Genome-wide copy number variation in Hanwoo, Black Angus, and Holstein cattle.

Choi JW, Lee KT, Liao X, Stothard P, An HS, Ahn S, Lee S, Lee SY, Moore SS, Kim TH.

Mamm Genome. 2013 Apr;24(3-4):151-63. doi: 10.1007/s00335-013-9449-z. Epub 2013 Mar 30.

PMID:
23543395
[PubMed - indexed for MEDLINE]
17.

The identification of candidate genes and SNP markers for classical bovine spongiform encephalopathy susceptibility.

Thomson JM, Bowles V, Choi JW, Basu U, Meng Y, Stothard P, Moore S.

Prion. 2012 Nov-Dec;6(5):461-9. doi: 10.4161/pri.21866. Epub 2012 Aug 23.

PMID:
22918267
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Fast accurate missing SNP genotype local imputation.

Wang Y, Cai Z, Stothard P, Moore S, Goebel R, Wang L, Lin G.

BMC Res Notes. 2012 Aug 3;5:404. doi: 10.1186/1756-0500-5-404.

PMID:
22863359
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Comparative analysis of two phenotypically-similar but genomically-distinct Burkholderia cenocepacia-specific bacteriophages.

Lynch KH, Stothard P, Dennis JJ.

BMC Genomics. 2012 Jun 7;13:223. doi: 10.1186/1471-2164-13-223.

PMID:
22676492
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Comparing thousands of circular genomes using the CGView Comparison Tool.

Grant JR, Arantes AS, Stothard P.

BMC Genomics. 2012 May 23;13:202. doi: 10.1186/1471-2164-13-202.

PMID:
22621371
[PubMed - indexed for MEDLINE]
Free PMC Article

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