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Items: 1 to 20 of 239

1.

Refining the Y chromosome phylogeny with southern African sequences.

Barbieri C, Hübner A, Macholdt E, Ni S, Lippold S, Schröder R, Mpoloka SW, Purps J, Roewer L, Stoneking M, Pakendorf B.

Hum Genet. 2016 May;135(5):541-53. doi: 10.1007/s00439-016-1651-0. Epub 2016 Apr 4.

2.

The Complex Admixture History and Recent Southern Origins of Siberian Populations.

Pugach I, Matveev R, Spitsyn V, Makarov S, Novgorodov I, Osakovsky V, Stoneking M, Pakendorf B.

Mol Biol Evol. 2016 Jul;33(7):1777-95. doi: 10.1093/molbev/msw055. Epub 2016 Mar 18.

3.

Age-Related and Heteroplasmy-Related Variation in Human mtDNA Copy Number.

Wachsmuth M, Hübner A, Li M, Madea B, Stoneking M.

PLoS Genet. 2016 Mar 15;12(3):e1005939. doi: 10.1371/journal.pgen.1005939. eCollection 2016 Mar.

4.

Improvement in detection of minor alleles in next generation sequencing by base quality recalibration.

Ni S, Stoneking M.

BMC Genomics. 2016 Feb 27;17:139. doi: 10.1186/s12864-016-2463-2.

5.

Transmission of human mtDNA heteroplasmy in the Genome of the Netherlands families: support for a variable-size bottleneck.

Li M, Rothwell R, Vermaat M, Wachsmuth M, Schröder R, Laros JF, van Oven M, de Bakker PI, Bovenberg JA, van Duijn CM, van Ommen GJ, Slagboom PE, Swertz MA, Wijmenga C; Genome of Netherlands Consortium, Kayser M, Boomsma DI, Zöllner S, de Knijff P, Stoneking M.

Genome Res. 2016 Apr;26(4):417-26. doi: 10.1101/gr.203216.115. Epub 2016 Feb 25.

PMID:
26916109
6.

Signatures of Evolutionary Adaptation in Quantitative Trait Loci Influencing Trace Element Homeostasis in Liver.

Engelken J, Espadas G, Mancuso FM, Bonet N, Scherr AL, Jímenez-Álvarez V, Codina-Solà M, Medina-Stacey D, Spataro N, Stoneking M, Calafell F, Sabidó E, Bosch E.

Mol Biol Evol. 2016 Mar;33(3):738-54. doi: 10.1093/molbev/msv267. Epub 2015 Nov 17.

7.

A founder effect for p47(phox)Trp193Ter chronic granulomatous disease in Kavkazi Jews.

de Boer M, Tzur S, van Leeuwen K, Dencher PC, Skorecki K, Wolach B, Gavrieli R, Nasidze I, Stoneking M, Tanck MW, Roos D.

Blood Cells Mol Dis. 2015 Dec;55(4):320-7. doi: 10.1016/j.bcmd.2015.07.014. Epub 2015 Jul 23.

PMID:
26460255
8.

Denisovan Ancestry in East Eurasian and Native American Populations.

Qin P, Stoneking M.

Mol Biol Evol. 2015 Oct;32(10):2665-74. doi: 10.1093/molbev/msv141. Epub 2015 Jun 23.

PMID:
26104010
9.

A novel candidate region for genetic adaptation to high altitude in Andean populations.

Valverde G, Zhou H, Lippold S, de Filippo C, Tang K, López Herráez D, Li J, Stoneking M.

PLoS One. 2015 May 11;10(5):e0125444. doi: 10.1371/journal.pone.0125444. eCollection 2015.

10.

Evaluating intra- and inter-individual variation in the human placental transcriptome.

Hughes DA, Kircher M, He Z, Guo S, Fairbrother GL, Moreno CS, Khaitovich P, Stoneking M.

Genome Biol. 2015 Mar 19;16:54. doi: 10.1186/s13059-015-0627-z.

11.

Genome-wide insights into the genetic history of human populations.

Pugach I, Stoneking M.

Investig Genet. 2015 Apr 1;6:6. doi: 10.1186/s13323-015-0024-0. eCollection 2015.

12.

Extensive tissue-related and allele-related mtDNA heteroplasmy suggests positive selection for somatic mutations.

Li M, Schröder R, Ni S, Madea B, Stoneking M.

Proc Natl Acad Sci U S A. 2015 Feb 24;112(8):2491-6. doi: 10.1073/pnas.1419651112. Epub 2015 Feb 9.

13.

Comparative analysis of the human saliva microbiome from different climate zones: Alaska, Germany, and Africa.

Li J, Quinque D, Horz HP, Li M, Rzhetskaya M, Raff JA, Hayes MG, Stoneking M.

BMC Microbiol. 2014 Dec 17;14:316. doi: 10.1186/s12866-014-0316-1.

14.

Two ancient human genomes reveal Polynesian ancestry among the indigenous Botocudos of Brazil.

Malaspinas AS, Lao O, Schroeder H, Rasmussen M, Raghavan M, Moltke I, Campos PF, Sagredo FS, Rasmussen S, Gonçalves VF, Albrechtsen A, Allentoft ME, Johnson PL, Li M, Reis S, Bernardo DV, DeGiorgio M, Duggan AT, Bastos M, Wang Y, Stenderup J, Moreno-Mayar JV, Brunak S, Sicheritz-Ponten T, Hodges E, Hannon GJ, Orlando L, Price TD, Jensen JD, Nielsen R, Heinemeier J, Olsen J, Rodrigues-Carvalho C, Lahr MM, Neves WA, Kayser M, Higham T, Stoneking M, Pena SD, Willerslev E.

Curr Biol. 2014 Nov 3;24(21):R1035-7. doi: 10.1016/j.cub.2014.09.078. Epub 2014 Oct 23.

15.

New insights into the history of the C-14010 lactase persistence variant in Eastern and Southern Africa.

Macholdt E, Slatkin M, Pakendorf B, Stoneking M.

Am J Phys Anthropol. 2015 Apr;156(4):661-4. doi: 10.1002/ajpa.22675. Epub 2014 Dec 2. Erratum in: Am J Phys Anthropol. 2015 Sep;158(1):172.

16.

Human paternal and maternal demographic histories: insights from high-resolution Y chromosome and mtDNA sequences.

Lippold S, Xu H, Ko A, Li M, Renaud G, Butthof A, Schröder R, Stoneking M.

Investig Genet. 2014 Sep 24;5:13. doi: 10.1186/2041-2223-5-13. eCollection 2014.

17.

Variation and signatures of selection on the human face.

Guo J, Tan J, Yang Y, Zhou H, Hu S, Hashan A, Bahaxar N, Xu S, Weaver TD, Jin L, Stoneking M, Tang K.

J Hum Evol. 2014 Oct;75:143-52. doi: 10.1016/j.jhevol.2014.08.001. Epub 2014 Sep 1.

18.

Global analysis of saliva as a source of bacterial genes for insights into human population structure and migration studies.

Henne K, Li J, Stoneking M, Kessler O, Schilling H, Sonanini A, Conrads G, Horz HP.

BMC Evol Biol. 2014 Aug 22;14:190. doi: 10.1186/s12862-014-0190-3.

19.

Recent developments in the genetic history of East Asia and Oceania.

Duggan AT, Stoneking M.

Curr Opin Genet Dev. 2014 Dec;29:9-14. doi: 10.1016/j.gde.2014.06.010. Epub 2014 Aug 23. Review.

PMID:
25170982
20.

Reconstructing Austronesian population history in Island Southeast Asia.

Lipson M, Loh PR, Patterson N, Moorjani P, Ko YC, Stoneking M, Berger B, Reich D.

Nat Commun. 2014 Aug 19;5:4689. doi: 10.1038/ncomms5689.

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