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Items: 1 to 20 of 78

1.

Benthic protists: the under-charted majority.

Forster D, Dunthorn M, Mahé F, Dolan JR, Audic S, Bass D, Bittner L, Boutte C, Christen R, Claverie JM, Decelle J, Edvardsen B, Egge E, Eikrem W, Gobet A, Kooistra WH, Logares R, Massana R, Montresor M, Not F, Ogata H, Pawlowski J, Pernice MC, Romac S, Shalchian-Tabrizi K, Simon N, Richards TA, Santini S, Sarno D, Siano R, Vaulot D, Wincker P, Zingone A, de Vargas C, Stoeck T.

FEMS Microbiol Ecol. 2016 Aug;92(8). pii: fiw120. doi: 10.1093/femsec/fiw120. Epub 2016 Jun 5.

PMID:
27267932
2.

Assessing Low-Intensity Relationships in Complex Networks.

Spitz A, Gimmler A, Stoeck T, Zweig KA, Horvát EÁ.

PLoS One. 2016 Apr 20;11(4):e0152536. doi: 10.1371/journal.pone.0152536. eCollection 2016.

3.

Microbial eukaryote plankton communities of high-mountain lakes from three continents exhibit strong biogeographic patterns.

Filker S, Sommaruga R, Vila I, Stoeck T.

Mol Ecol. 2016 May;25(10):2286-301. doi: 10.1111/mec.13633. Epub 2016 May 14.

PMID:
27029537
4.

Comparison of three clustering approaches for detecting novel environmental microbial diversity.

Forster D, Dunthorn M, Stoeck T, Mahé F.

PeerJ. 2016 Feb 25;4:e1692. doi: 10.7717/peerj.1692. eCollection 2016.

5.

Description of the Halophile Euplotes qatarensis nov. spec. (Ciliophora, Spirotrichea, Euplotida) Isolated from the Hypersaline Khor Al-Adaid Lagoon in Qatar.

Fotedar R, Stoeck T, Filker S, Fell JW, Agatha S, Al Marri M, Jiang J.

J Eukaryot Microbiol. 2016 Feb 10. doi: 10.1111/jeu.12305. [Epub ahead of print]

PMID:
26864150
6.

Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing.

Massana R, Gobet A, Audic S, Bass D, Bittner L, Boutte C, Chambouvet A, Christen R, Claverie JM, Decelle J, Dolan JR, Dunthorn M, Edvardsen B, Forn I, Forster D, Guillou L, Jaillon O, Kooistra WH, Logares R, Mahé F, Not F, Ogata H, Pawlowski J, Pernice MC, Probert I, Romac S, Richards T, Santini S, Shalchian-Tabrizi K, Siano R, Simon N, Stoeck T, Vaulot D, Zingone A, de Vargas C.

Environ Microbiol. 2015 Oct;17(10):4035-49. doi: 10.1111/1462-2920.12955. Epub 2015 Aug 4.

PMID:
26119494
7.
8.

High diversity of protistan plankton communities in remote high mountain lakes in the European Alps and the Himalayan mountains.

Kammerlander B, Breiner HW, Filker S, Sommaruga R, Sonntag B, Stoeck T.

FEMS Microbiol Ecol. 2015 Apr;91(4). pii: fiv010. doi: 10.1093/femsec/fiv010. Epub 2015 Jan 27.

9.

Testing ecological theories with sequence similarity networks: marine ciliates exhibit similar geographic dispersal patterns as multicellular organisms.

Forster D, Bittner L, Karkar S, Dunthorn M, Romac S, Audic S, Lopez P, Stoeck T, Bapteste E.

BMC Biol. 2015 Feb 24;13:16. doi: 10.1186/s12915-015-0125-5.

10.

Deep sequencing uncovers protistan plankton diversity in the Portuguese Ria Formosa solar saltern ponds.

Filker S, Gimmler A, Dunthorn M, Mahé F, Stoeck T.

Extremophiles. 2015 Mar;19(2):283-95. doi: 10.1007/s00792-014-0713-2. Epub 2014 Dec 4.

PMID:
25472012
11.

Protistan diversity in a permanently stratified meromictic lake (Lake Alatsee, SW Germany).

Oikonomou A, Filker S, Breiner HW, Stoeck T.

Environ Microbiol. 2015 Jun;17(6):2144-57. doi: 10.1111/1462-2920.12666. Epub 2014 Dec 11.

PMID:
25330396
12.

Comparing High-throughput Platforms for Sequencing the V4 Region of SSU-rDNA in Environmental Microbial Eukaryotic Diversity Surveys.

Mahé F, Mayor J, Bunge J, Chi J, Siemensmeyer T, Stoeck T, Wahl B, Paprotka T, Filker S, Dunthorn M.

J Eukaryot Microbiol. 2015 May-Jun;62(3):338-45. doi: 10.1111/jeu.12187. Epub 2014 Nov 20.

PMID:
25312509
13.

Ciliates and the rare biosphere: a review.

Dunthorn M, Stoeck T, Clamp J, Warren A, Mahé F.

J Eukaryot Microbiol. 2014 Jul-Aug;61(4):404-9. doi: 10.1111/jeu.12121. Epub 2014 Jun 2. Review.

PMID:
24801645
14.

Patterns of rare and abundant marine microbial eukaryotes.

Logares R, Audic S, Bass D, Bittner L, Boutte C, Christen R, Claverie JM, Decelle J, Dolan JR, Dunthorn M, Edvardsen B, Gobet A, Kooistra WH, Mahé F, Not F, Ogata H, Pawlowski J, Pernice MC, Romac S, Shalchian-Tabrizi K, Simon N, Stoeck T, Santini S, Siano R, Wincker P, Zingone A, Richards TA, de Vargas C, Massana R.

Curr Biol. 2014 Apr 14;24(8):813-21. doi: 10.1016/j.cub.2014.02.050. Epub 2014 Apr 3.

15.

"Candidatus Haloectosymbiotes riaformosensis" (Halobacteriaceae), an archaeal ectosymbiont of the hypersaline ciliate Platynematum salinarum.

Filker S, Kaiser M, Rosselló-Móra R, Dunthorn M, Lax G, Stoeck T.

Syst Appl Microbiol. 2014 Jun;37(4):244-51. doi: 10.1016/j.syapm.2014.01.001. Epub 2014 Mar 12.

PMID:
24629416
16.

Tritirachium candoliense sp. nov., a novel basidiomycetous fungus isolated from the anoxic zone of the Arabian Sea.

Manohar CS, Boekhout T, Müller WH, Stoeck T.

Fungal Biol. 2014 Feb;118(2):139-49. doi: 10.1016/j.funbio.2013.10.010. Epub 2013 Nov 21.

PMID:
24528637
17.

The chaos prevails: molecular phylogeny of the Haptoria (Ciliophora, Litostomatea).

Vďačný P, Breiner HW, Yashchenko V, Dunthorn M, Stoeck T, Foissner W.

Protist. 2014 Jan;165(1):93-111. doi: 10.1016/j.protis.2013.11.001. Epub 2013 Dec 1.

PMID:
24524973
18.

Dissimilatory nitrate reduction by Aspergillus terreus isolated from the seasonal oxygen minimum zone in the Arabian Sea.

Stief P, Fuchs-Ocklenburg S, Kamp A, Manohar CS, Houbraken J, Boekhout T, de Beer D, Stoeck T.

BMC Microbiol. 2014 Feb 11;14:35. doi: 10.1186/1471-2180-14-35.

19.
20.

Placing environmental next-generation sequencing amplicons from microbial eukaryotes into a phylogenetic context.

Dunthorn M, Otto J, Berger SA, Stamatakis A, Mahé F, Romac S, de Vargas C, Audic S; Biomarks Consortium, Stock A, Kauff F, Stoeck T.

Mol Biol Evol. 2014 Apr;31(4):993-1009. doi: 10.1093/molbev/msu055. Epub 2014 Jan 27.

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